Fix minor check issues #324
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| on: | |
| push: | |
| pull_request: | |
| branches: | |
| - devel | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ubuntu-latest | |
| container: ghcr.io/alanocallaghan/scater:latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v3 | |
| - name: Install dependencies | |
| run: | | |
| dependencies <- remotes::local_package_deps(dependencies = TRUE) | |
| leftovers <- setdiff(dependencies, installed.packages()) | |
| BiocManager::install(leftovers, ask=FALSE, Ncpu=2L) | |
| remotes::install_cran("rcmdcheck") | |
| shell: Rscript {0} | |
| - name: Check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_REMOTE_: false | |
| run: rcmdcheck::rcmdcheck(args = "--no-manual", error_on = "error", check_dir = "check") | |
| shell: Rscript {0} | |
| # - name: BiocCheck | |
| # uses: insightsengineering/bioc-check-action@v1 |