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NEWS
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Changes in version 1.19
* Changes in version 1.19.0
+ Starting devel for Bioconductor 3.18
* Changes in version 1.19.1
+ Bug fix: Correct url for rna_tissue_consensus
Changes in version 1.17
* Changes in version 1.17.0
+ Starting devel for Bioconductor 3.17
* Changes in version 1.17.1
+ Update built-in data to version 22.0.
* Changes in version 1.17.2
+ Update HPA download to correctly download new version 22.0 data.
+ Update documentation.
Changes in version 1.15
* Changes in version 1.15.1
+ Update built-in data to HPA version 21.1.
* Changes in version 1.15.0
+ Starting devel for Bioconductor 3.16
Changes in version 1.13
* Changes in version 1.13.1
+ Update built-in data to HPA version 21.0.
* Changes in version 1.13.0
+ Starting devel for Bioconductor 3.15
Changes in version 1.9
* Changes in version 1.9.5
+ hpaVisTissue now plots all tissues by default
+ hpaDownload shortcuts for downloadList arg can now be combined
+ Bug fixes and performance improvements
* Changes in version 1.9.4
+ hpaVisPatho can now facet by cancers or genes
+ Vignettes update
+ Bug fixes and performance improvements
* Changes in version 1.9.3
+ Update the default color to be more accessible (based on viridis::magma)
+ Updated hpaSubset and hpaListParam to work properly with new data
* Changes in version 1.9.2
+ hpaDownload can now download every downloadable datasets from HPA.
+ Update built-in data to HPA version 20.1.
* Changes in version 1.9.1
+ Update built-in data to HPA version 20.
* Changes in version 1.9.0
+ Starting devel for Bioconductor 3.13
Changes in version 1.5
* Changes in version 1.5.3
+ Update built-in data to HPA version 19.
* Changes in version 1.5.2
+ Minor bug fixes.
* Changes in version 1.5.1
+ Add documentation with pkgdown. Minor updates to documentation.
+ tidyr and readr dependencies have been replaced with base R solutions.
+ Importing data from hpar is no longer supported.
+ hpaDownload function was updated to correctly download data in HPA version 19.
* Changes in version 1.5.0
+ Starting devel for Bioconductor 3.10
Changes in version 1.4
* Changes in version 1.4.0
+ Official relase in Bioconductor 3.10
Changes in version 1.3
* Changes in version 1.3.3
+ Fix sn error introduced in version 1.3.2 where hpaVisPatho plotted incorrectly.
+ Added a vignette with codes for figures in the HPAanalyze manuscript.
* Changes in version 1.3.2
+ To reduce dependency, hpaVis now use gridExtra for multiple plots instead of cowplot
+ Removed dependency on reshape2
* Changes in version 1.3.1
+ hpaExport is now supporting csv and tsv.
+ Support for JSON export is added via vignette.
+ Fix the error where hpaXmlGet give an error when curl is not installed.
+ Most functions with now take both HGNC gene names and ensemble ids.
+ hpaVisSubcell now allows user to choose reliability scores.
+ Removed dependency on magrittr
* Changes in version 1.3.0
+ Starting devel for Bioconductor 3.10
Changes in version 1.2
* Changes in version 1.2.0
+ Official relase in Bioconductor 3.9
Changes in version 1.1
* Changes in version 1.1.5
+ Reformatted NEWS file.
* Changes in version 1.1.4
+ Added the query vignette.
* Changes in version 1.1.3
+ Fixed issues where hpaVis and hpaXml give faulty output.
+ All hpaVis functions as well as hpaListParam and hpaSubset now use the bundled dataset by defauft if no data argument is specifed.
+ All hpaVis functions now have default for all of their arguments and will create a warning message when the defaults are used.
+ The in-depth vignette was rewritten, and new vignettes added for ease of use.
+ Updated the themes of hpaVis functions for better clarity.
+ Updated documentations.
+ Hex sticker is now available.
* Changes in version 1.1.1
+ HPAanalyze now uses openxlsx for hpaExport() instead of XLConnect.
* Changes in version 1.1.0
+ Starting devel for Bioconductor 3.9
Changes in version 1.0
* Changes in version 1.0.0
+ Official relase in Bioconductor 3.8
Changes in version 0.99
* Changes in version 0.99.19
+ Update CITATION
* Changes in version 0.99.18
+ Add 'journal' to CITATION
+ Add '+ file LICENSE' to DESCRIPTION
* Changes in version 0.99.17
+ Standardize the NEWS file
+ Add CITATION file
* Changes in version 0.99.16
+ Update License. Now use GPL-3 instead of MIT.
* Changes in version 0.99.14
+ Replace visType == 'all' in hpaVis() with identical(visType, 'all')
+ Replace extractType == 'all' in hpaXml() with identical(extractType, 'all')
* Changes in version 0.99.13
+ Fix example for hpaXml() (issue #5)
+ Update documentation for hpa_downloaded_histology_v18 dataset (issue #6)
+ Re-name R/data.R to R/hpa_downloaded_histology_v18.R (issue #7)
+ Cross-reference documentations (issues #8, #9)
+ Combining hpaListParam() and hpaSubset() on one man page (issue #10)
* Changes in version 0.99.12
+ Minor edit in hpaXml() function
* Changes in version 0.99.11
+ Add the hpaVis() function as an umbrella for the whole function family
+ Add the hpaXml() function as an umbrella for all XML extraction
+ Remove the ignore/ directory
+ Import individual functions for xml2
+ Remove /dontrun{} on man pages
+ Modifications to hpaVis functions for better consistency
+ Updated the help files with details about output of each function
* Changes in version 0.99.10
+ Initital version reviewed by Bioconductor