diff --git a/packages/g6/__tests__/unit/utils/data.spec.ts b/packages/g6/__tests__/unit/utils/data.spec.ts
index 98a68ff4967..a3e6a8f676d 100644
--- a/packages/g6/__tests__/unit/utils/data.spec.ts
+++ b/packages/g6/__tests__/unit/utils/data.spec.ts
@@ -1,5 +1,5 @@
 import type { EdgeData, NodeData } from '@/src';
-import { cloneElementData, isEmptyData, mergeElementsData } from '@/src/utils/data';
+import { cloneElementData, isElementDataEqual, isEmptyData, mergeElementsData } from '@/src/utils/data';
 
 describe('data', () => {
   it('mergeElementsData', () => {
@@ -99,4 +99,56 @@ describe('data', () => {
     expect(isEmptyData({ edges: [{ id: 'edge-1', source: 'node-1', target: 'node-2' }] })).toBe(false);
     expect(isEmptyData({ combos: [{ id: 'combo-1' }] })).toBe(false);
   });
+
+  it('isElementDataEqual', () => {
+    expect(isElementDataEqual({ id: 'node-1' }, { id: 'node-1' })).toBe(true);
+    expect(isElementDataEqual({ id: 'node-1' }, { id: 'node-2' })).toBe(false);
+
+    // children
+    expect(isElementDataEqual({ id: 'node-1', children: ['a', 'b'] }, { id: 'node-1', children: ['a', 'b'] })).toBe(
+      true,
+    );
+    expect(isElementDataEqual({ id: 'node-1', children: ['a', 'b'] }, { id: 'node-1', children: ['a', 'c'] })).toBe(
+      false,
+    );
+    expect(
+      isElementDataEqual({ id: 'node-1', children: ['a', 'b'] }, { id: 'node-1', children: ['a', 'b', 'c'] }),
+    ).toBe(false);
+    expect(isElementDataEqual({ id: 'node-1' }, { id: 'node-1', data: {} })).toBe(true);
+    expect(isElementDataEqual({ id: 'node-1', data: { value: 1 } }, { id: 'node-1', data: { value: 1 } })).toBe(true);
+
+    // states
+    expect(isElementDataEqual({ id: 'node-1' }, { id: 'node-1', states: [] })).toBe(true);
+    expect(isElementDataEqual({ id: 'node-1', states: [] }, { id: 'node-1', states: [] })).toBe(true);
+    expect(isElementDataEqual({ id: 'node-1', states: ['selected'] }, { id: 'node-1', states: ['selected'] })).toBe(
+      true,
+    );
+    expect(
+      isElementDataEqual({ id: 'node-1', states: ['selected'] }, { id: 'node-1', states: ['selected', 'hover'] }),
+    ).toBe(false);
+
+    // too deep
+    const obj = { a: 1 };
+    expect(
+      isElementDataEqual({ id: 'node-1', data: { value: { ...obj } } }, { id: 'node-1', data: { value: { ...obj } } }),
+    ).toBe(false);
+    expect(isElementDataEqual({ id: 'node-1', data: { value: obj } }, { id: 'node-1', data: { value: obj } })).toBe(
+      true,
+    );
+
+    // style
+    expect(isElementDataEqual({ id: 'node-1' }, { id: 'node-1', style: {} })).toBe(true);
+    expect(isElementDataEqual({ id: 'node-1', style: { fill: 'red' } }, { id: 'node-1', style: { fill: 'red' } })).toBe(
+      true,
+    );
+    expect(
+      isElementDataEqual({ id: 'node-1', style: { fill: 'red' } }, { id: 'node-1', style: { fill: 'blue' } }),
+    ).toBe(false);
+    expect(
+      isElementDataEqual(
+        { id: 'node-1', style: { fill: 'red' } },
+        { id: 'node-1', style: { fill: 'red', stroke: 'red' } },
+      ),
+    ).toBe(false);
+  });
 });
diff --git a/packages/g6/src/runtime/data.ts b/packages/g6/src/runtime/data.ts
index aa062399db9..8126e3c123a 100644
--- a/packages/g6/src/runtime/data.ts
+++ b/packages/g6/src/runtime/data.ts
@@ -1,5 +1,5 @@
 import { Graph as GraphLib } from '@antv/graphlib';
-import { isEqual, isUndefined, uniq } from '@antv/util';
+import { isUndefined, uniq } from '@antv/util';
 import { COMBO_KEY, ChangeType, TREE_KEY } from '../constants';
 import type { ComboData, EdgeData, GraphData, NodeData } from '../spec';
 import type {
@@ -20,7 +20,7 @@ import type {
 } from '../types';
 import type { EdgeDirection } from '../types/edge';
 import type { ElementType } from '../types/element';
-import { cloneElementData, mergeElementsData } from '../utils/data';
+import { cloneElementData, isElementDataEqual, mergeElementsData } from '../utils/data';
 import { arrayDiff } from '../utils/diff';
 import { toG6Data, toGraphlibData } from '../utils/graphlib';
 import { idOf, parentIdOf } from '../utils/id';
@@ -292,9 +292,9 @@ export class DataController {
     const { nodes: modifiedNodes = [], edges: modifiedEdges = [], combos: modifiedCombos = [] } = data;
     const { nodes: originalNodes, edges: originalEdges, combos: originalCombos } = this.getData();
 
-    const nodeDiff = arrayDiff(originalNodes, modifiedNodes, (node) => idOf(node));
-    const edgeDiff = arrayDiff(originalEdges, modifiedEdges, (edge) => idOf(edge));
-    const comboDiff = arrayDiff(originalCombos, modifiedCombos, (combo) => idOf(combo));
+    const nodeDiff = arrayDiff(originalNodes, modifiedNodes, (node) => idOf(node), isElementDataEqual);
+    const edgeDiff = arrayDiff(originalEdges, modifiedEdges, (edge) => idOf(edge), isElementDataEqual);
+    const comboDiff = arrayDiff(originalCombos, modifiedCombos, (combo) => idOf(combo), isElementDataEqual);
 
     this.batch(() => {
       this.addData({
@@ -430,7 +430,7 @@ export class DataController {
       nodes.forEach((modifiedNode) => {
         const id = idOf(modifiedNode);
         const originalNode = toG6Data(model.getNode(id));
-        if (isEqual(originalNode, modifiedNode)) return;
+        if (isElementDataEqual(originalNode, modifiedNode)) return;
 
         const value = mergeElementsData(originalNode, modifiedNode);
         this.pushChange({ value, original: originalNode, type: ChangeType.NodeUpdated });
@@ -476,7 +476,7 @@ export class DataController {
       edges.forEach((modifiedEdge) => {
         const id = idOf(modifiedEdge);
         const originalEdge = toG6Data(model.getEdge(id));
-        if (isEqual(originalEdge, modifiedEdge)) return;
+        if (isElementDataEqual(originalEdge, modifiedEdge)) return;
 
         if (modifiedEdge.source && originalEdge.source !== modifiedEdge.source) {
           model.updateEdgeSource(id, modifiedEdge.source);
@@ -499,7 +499,7 @@ export class DataController {
       combos.forEach((modifiedCombo) => {
         const id = idOf(modifiedCombo);
         const originalCombo = toG6Data(model.getNode(id)) as ComboData;
-        if (isEqual(originalCombo, modifiedCombo)) return;
+        if (isElementDataEqual(originalCombo, modifiedCombo)) return;
 
         const value = mergeElementsData(originalCombo, modifiedCombo);
         this.pushChange({ value, original: originalCombo, type: ChangeType.ComboUpdated });
diff --git a/packages/g6/src/runtime/element.ts b/packages/g6/src/runtime/element.ts
index 05df5a26215..6aa45363b66 100644
--- a/packages/g6/src/runtime/element.ts
+++ b/packages/g6/src/runtime/element.ts
@@ -664,11 +664,9 @@ export class ElementController {
 
     const context = { animation, stage: 'expand', data: drawData } as const;
 
-    // 将新增边添加到更新列表 / Add new edges to the update list
-    add.edges.forEach((edge) => {
-      const id = idOf(edge);
-      if (!update.edges.has(id)) update.edges.set(id, edge);
-    });
+    // 将新增节点/边添加到更新列表 / Add new nodes/edges to the update list
+    add.edges.forEach((edge) => update.edges.set(idOf(edge), edge));
+    add.nodes.forEach((node) => update.nodes.set(idOf(node), node));
 
     this.updateElements(update, context);
 
diff --git a/packages/g6/src/utils/data.ts b/packages/g6/src/utils/data.ts
index 535b4cd77dc..5d8894a0f75 100644
--- a/packages/g6/src/utils/data.ts
+++ b/packages/g6/src/utils/data.ts
@@ -1,5 +1,6 @@
 import { get } from '@antv/util';
 import type { ComboData, EdgeData, GraphData, NodeData } from '../spec';
+import type { ElementDatum, ID } from '../types';
 
 /**
  * <zh/> 合并两个 节点/边/Combo 的数据
@@ -62,3 +63,51 @@ export function cloneElementData<T extends NodeData | EdgeData | ComboData>(data
 export function isEmptyData(data: GraphData) {
   return !get(data, ['nodes', 'length']) && !get(data, ['edges', 'length']) && !get(data, ['combos', 'length']);
 }
+
+/**
+ * <zh/> 判断两个元素数据是否相等
+ *
+ * <en/> Determine if two element data are equal
+ * @param original - <zh/> 原始数据 | <en/> original data
+ * @param modified - <zh/> 修改后的数据 | <en/> modified data
+ * @returns <zh/> 是否相等 | <en/> is equal
+ * @remarks
+ * <zh/> 相比于 isEqual，这个方法不会比较更下层的数据
+ *
+ * <en/> Compared to isEqual, this method does not compare data at a lower level
+ */
+export function isElementDataEqual(original: Partial<ElementDatum> = {}, modified: Partial<ElementDatum> = {}) {
+  const {
+    states: originalStates = [],
+    data: originalData = {},
+    style: originalStyle = {},
+    children: originalChildren = [],
+    ...originalAttrs
+  } = original;
+  const {
+    states: modifiedStates = [],
+    data: modifiedData = {},
+    style: modifiedStyle = {},
+    children: modifiedChildren = [],
+    ...modifiedAttrs
+  } = modified;
+
+  const isArrayEqual = (arr1: unknown[], arr2: unknown[]) => {
+    if (arr1.length !== arr2.length) return false;
+    return arr1.every((item, index) => item === arr2[index]);
+  };
+  const isObjectEqual = (obj1: Record<string, unknown>, obj2: Record<string, unknown>) => {
+    const keys1 = Object.keys(obj1);
+    const keys2 = Object.keys(obj2);
+    if (keys1.length !== keys2.length) return false;
+    return keys1.every((key) => obj1[key] === obj2[key]);
+  };
+
+  if (!isObjectEqual(originalAttrs, modifiedAttrs)) return false;
+  if (!isArrayEqual(originalChildren as ID[], modifiedChildren as ID[])) return false;
+  if (!isArrayEqual(originalStates, modifiedStates)) return false;
+  if (!isObjectEqual(originalData, modifiedData)) return false;
+  if (!isObjectEqual(originalStyle, modifiedStyle)) return false;
+
+  return true;
+}
diff --git a/packages/g6/src/utils/diff.ts b/packages/g6/src/utils/diff.ts
index a1d5f0a69ad..ce3fecb2598 100644
--- a/packages/g6/src/utils/diff.ts
+++ b/packages/g6/src/utils/diff.ts
@@ -7,9 +7,15 @@ import { isEqual } from '@antv/util';
  * @param original - <zh/> 原始数组 | <en/> original array
  * @param modified - <zh/> 修改后的数组 | <en/> modified array
  * @param key - <zh/> 比较的 key | <en/> key to compare
+ * @param comparator - <zh/> 比较函数 | <en/> compare function
  * @returns <zh/> 数组差异 | <en/> array diff
  */
-export function arrayDiff<T>(original: T[], modified: T[], key: (d: T) => string | number) {
+export function arrayDiff<T>(
+  original: T[],
+  modified: T[],
+  key: (d: T) => string | number,
+  comparator: (a?: T, b?: T) => boolean = isEqual,
+) {
   const originalMap = new Map(original.map((d) => [key(d), d]));
   const modifiedMap = new Map(modified.map((d) => [key(d), d]));
 
@@ -23,7 +29,7 @@ export function arrayDiff<T>(original: T[], modified: T[], key: (d: T) => string
 
   modifiedSet.forEach((key) => {
     if (originalSet.has(key)) {
-      if (!isEqual(originalMap.get(key), modifiedMap.get(key))) {
+      if (!comparator(originalMap.get(key), modifiedMap.get(key))) {
         update.push(modifiedMap.get(key)!);
       } else {
         keep.push(modifiedMap.get(key)!);