diff --git a/superset-frontend/src/dashboard/actions/nativeFilters.ts b/superset-frontend/src/dashboard/actions/nativeFilters.ts
index 359adb87ea59c..337d3044a5411 100644
--- a/superset-frontend/src/dashboard/actions/nativeFilters.ts
+++ b/superset-frontend/src/dashboard/actions/nativeFilters.ts
@@ -188,6 +188,25 @@ export const setInScopeStatusOfFilters =
       type: SET_IN_SCOPE_STATUS_OF_FILTERS,
       filterConfig: filtersWithScopes,
     });
+    // need to update native_filter_configuration in the dashboard metadata
+    const { metadata } = getState().dashboardInfo;
+    const filterConfig: FilterConfiguration =
+      metadata.native_filter_configuration;
+    const mergedFilterConfig = filterConfig.map(filter => {
+      const filterWithScope = filtersWithScopes.find(
+        scope => scope.id === filter.id,
+      );
+      if (!filterWithScope) {
+        return filter;
+      }
+      return { ...filterWithScope, ...filter };
+    });
+    metadata.native_filter_configuration = mergedFilterConfig;
+    dispatch(
+      dashboardInfoChanged({
+        metadata,
+      }),
+    );
   };
 
 type BootstrapData = {