From 5691ce39700a582e9410371c746cac41b3cdaeab Mon Sep 17 00:00:00 2001 From: Drew DeHaas Date: Mon, 23 Dec 2024 12:20:38 -0500 Subject: [PATCH] Update README to refer to pyigd --- README.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 407e5b3..f3453ea 100644 --- a/README.md +++ b/README.md @@ -14,6 +14,8 @@ Features: More details can be found in the supplement of our [preprint "Genotype Representation Graph" paper](https://www.biorxiv.org/content/10.1101/2024.04.23.590800v1). +See also [pyigd](https://github.com/aprilweilab/pyigd/) if you want Python access to IGD files. + ## Using the library Either copy the latest header file (`picovcf.hpp`) into your project directly, or make use of something like git submodules to include https://github.com/aprilweilab/picovcf. @@ -87,4 +89,4 @@ Converting the `.vcf.gz` to `.bgen` (via qctool) took 23 minutes, but converting * Use `igdtools` to convert and process files * Do one of the following: * If your project is C++, copy [picovcf.hpp](https://github.com/aprilweilab/picovcf/blob/main/picovcf.hpp) into your project, `#include` it somewhere and then use according to the [documentation](https://picovcf.readthedocs.io/en/latest/) - * If your project is Python, clone [pyigd](https://github.com/aprilweilab/pyigd/) and install it per the [README instructions](https://github.com/aprilweilab/pyigd/blob/main/README.md). + * If your project is Python, you can install [pyigd](https://github.com/aprilweilab/pyigd/) via `pip install pyigd` (see [the docs](https://pyigd.readthedocs.io/en/latest/))