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Issue with pyproj as dependency #8177

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paulf81 opened this issue Oct 14, 2024 · 20 comments
Closed

Issue with pyproj as dependency #8177

paulf81 opened this issue Oct 14, 2024 · 20 comments
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@charliermarsh
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question Asking for clarification or support

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@paulf81
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paulf81 commented Oct 14, 2024

I have a small uv project that includes a pyproject.toml:

[project]
name = "test_repo"
version = "0.1.0"
description = "Add your description here"
readme = "README.md"
requires-python = ">=3.11"
dependencies = ["pyproj"]

If I run on the command line:

uv sync

I have the output:

$ uv sync
Resolved 3 packages in 4ms
error: Failed to prepare distributions
  Caused by: Failed to fetch wheel: pyproj==3.7.0
  Caused by: Build backend failed to determine requirements with `build_wheel()` (exit status: 1)

[stderr]
proj executable not found. Please set the PROJ_DIR variable. For more information see: https://pyproj4.github.io/pyproj/stable/installation.html

Following through the provided link, the variable mentioned is required when building from source, but is that what I'm doing in the above example? Thank you for any help!
@zanieb
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zanieb commented Oct 14, 2024

Can you share the uv.lock file?

@paulf81
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paulf81 commented Oct 14, 2024 •
edited by zanieb
Loading 

version = 1
requires-python = ">=3.11"

[[package]]
name = "certifi"
version = "2024.8.30"
source = { registry = "https://pypi.org/simple" }
sdist = { url = "https://files.pythonhosted.org/packages/b0/ee/9b19140fe824b367c04c5e1b369942dd754c4c5462d5674002f75c4dedc1/certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9", size = 168507 }
wheels = [
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]

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name = "pyproj"
version = "3.7.0"
source = { registry = "https://pypi.org/simple" }
dependencies = [
    { name = "certifi" },
]
sdist = { url = "https://files.pythonhosted.org/packages/47/c2/0572c8e31aebf0270f15f3368adebd10fc473de9f09567a0743a3bc41c8d/pyproj-3.7.0.tar.gz", hash = "sha256:bf658f4aaf815d9d03c8121650b6f0b8067265c36e31bc6660b98ef144d81813", size = 225577 }
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[[package]]
name = "test-repo"
version = "0.1.0"
source = { virtual = "." }
dependencies = [
    { name = "pyproj" },
]

[package.metadata]
requires-dist = [{ name = "pyproj" }]

@zanieb
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zanieb commented Oct 14, 2024

And what platform are you are? Like OS and architecture?

Can you share uv sync -v logs?

@paulf81
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paulf81 commented Oct 14, 2024

I'm on a mac with Apple M1 Pro. Here are those logs:

DEBUG uv 0.4.20 (Homebrew 2024-10-08)
DEBUG Found project root: /Users/pfleming/test_repo
DEBUG No workspace root found, using project root
DEBUG Reading requests from /Users/pfleming/test_repo/.python-version
DEBUG The virtual environment's Python version satisfies Python 3.11
DEBUG Using request timeout of 30s
DEBUG Found static pyproject.toml for: test-repo @ file:///Users/pfleming/test_repo
DEBUG No workspace root found, using project root
DEBUG Existing uv.lock satisfies workspace requirements
Resolved 3 packages in 1ms
DEBUG Using request timeout of 30s
DEBUG Requirement already cached: certifi==2024.8.30
DEBUG Identified uncached distribution: pyproj==3.7.0
DEBUG Acquired lock for /Users/pfleming/.cache/uv/sdists-v4/pypi/pyproj/3.7.0
DEBUG Found fresh response for: https://files.pythonhosted.org/packages/47/c2/0572c8e31aebf0270f15f3368adebd10fc473de9f09567a0743a3bc41c8d/pyproj-3.7.0.tar.gz
DEBUG Building: pyproj==3.7.0
DEBUG Ignoring empty directory
DEBUG Resolving build requirements
DEBUG Solving with installed Python version: 3.11.10
DEBUG Solving with target Python version: >=3.11.10
DEBUG Adding direct dependency: setuptools>=61.0.0
DEBUG Adding direct dependency: wheel*
DEBUG Adding direct dependency: cython>=3
DEBUG Found fresh response for: https://pypi.org/simple/wheel/
DEBUG Found fresh response for: https://pypi.org/simple/setuptools/
DEBUG Searching for a compatible version of setuptools (>=61.0.0)
DEBUG Selecting: setuptools==75.1.0 [compatible] (setuptools-75.1.0-py3-none-any.whl)
DEBUG Found fresh response for: https://files.pythonhosted.org/packages/1b/d1/9babe2ccaecff775992753d8686970b1e2755d21c8a63be73aba7a4e7d77/wheel-0.44.0-py3-none-any.whl.metadata
DEBUG Found fresh response for: https://pypi.org/simple/cython/
DEBUG Found fresh response for: https://files.pythonhosted.org/packages/ff/ae/f19306b5a221f6a436d8f2238d5b80925004093fa3edea59835b514d9057/setuptools-75.1.0-py3-none-any.whl.metadata
DEBUG Searching for a compatible version of wheel (*)
DEBUG Selecting: wheel==0.44.0 [compatible] (wheel-0.44.0-py3-none-any.whl)
DEBUG Searching for a compatible version of cython (>=3)
DEBUG Selecting: cython==3.0.11 [compatible] (Cython-3.0.11-py2.py3-none-any.whl)
DEBUG Found fresh response for: https://files.pythonhosted.org/packages/43/39/bdbec9142bc46605b54d674bf158a78b191c2b75be527c6dcf3e6dfe90b8/Cython-3.0.11-py2.py3-none-any.whl.metadata
DEBUG Tried 3 versions: cython 1, setuptools 1, wheel 1
DEBUG Split specific environment resolution took 0.004s
DEBUG Installing in cython==3.0.11, setuptools==75.1.0, wheel==0.44.0 in /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX
DEBUG Requirement already cached: cython==3.0.11
DEBUG Requirement already cached: setuptools==75.1.0
DEBUG Requirement already cached: wheel==0.44.0
DEBUG Installing build requirements: cython==3.0.11, setuptools==75.1.0, wheel==0.44.0
DEBUG Extracting file name=PackageName("wheel")
DEBUG Extracting file name=PackageName("cython")
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/ze6QisJCv0xstyl95YuW-/wheel-0.44.0.dist-info to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/wheel-0.44.0.dist-info
DEBUG Extracting file name=PackageName("setuptools")
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/YyttNL24_v5ysK1y1K43P/cython.py to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/cython.py
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/ZRDZKhrmPrm7PKKDc_JA0/distutils-precedence.pth to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/distutils-precedence.pth
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/ze6QisJCv0xstyl95YuW-/wheel to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/wheel
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/YyttNL24_v5ysK1y1K43P/Cython to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/Cython
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/ZRDZKhrmPrm7PKKDc_JA0/setuptools-75.1.0.dist-info to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/setuptools-75.1.0.dist-info
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/YyttNL24_v5ysK1y1K43P/pyximport to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/pyximport
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/ZRDZKhrmPrm7PKKDc_JA0/setuptools to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/setuptools
DEBUG Extracted 2 files name=PackageName("wheel")
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/YyttNL24_v5ysK1y1K43P/Cython-3.0.11.dist-info to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/Cython-3.0.11.dist-info
DEBUG Writing entrypoints name=PackageName("wheel")
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/ZRDZKhrmPrm7PKKDc_JA0/pkg_resources to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/pkg_resources
DEBUG No data name=PackageName("wheel")
DEBUG Writing extra metadata name=PackageName("wheel")
DEBUG Cloning /Users/pfleming/.cache/uv/archive-v0/ZRDZKhrmPrm7PKKDc_JA0/_distutils_hack to /Users/pfleming/.cache/uv/builds-v0/.tmpE5dhUX/lib/python3.11/site-packages/_distutils_hack
DEBUG Extracted 4 files name=PackageName("cython")
DEBUG Writing entrypoints name=PackageName("cython")
DEBUG Extracted 5 files name=PackageName("setuptools")
DEBUG Writing record name=PackageName("wheel")
DEBUG No entrypoints name=PackageName("setuptools")
DEBUG No data name=PackageName("setuptools")
DEBUG Writing extra metadata name=PackageName("setuptools")
DEBUG Writing record name=PackageName("setuptools")
DEBUG No data name=PackageName("cython")
DEBUG Writing extra metadata name=PackageName("cython")
DEBUG Writing record name=PackageName("cython")
DEBUG Creating PEP 517 build environment
DEBUG Calling setuptools.build_meta.get_requires_for_build_wheel()
DEBUG proj executable not found. Please set the PROJ_DIR variable. For more information see: https://pyproj4.github.io/pyproj/stable/installation.html
DEBUG Released lock at /Users/pfleming/.cache/uv/sdists-v4/pypi/pyproj/3.7.0/.lock
error: Failed to prepare distributions
Caused by: Failed to fetch wheel: pyproj==3.7.0
Caused by: Build backend failed to determine requirements with build_wheel() (exit status: 1)

[stderr]
proj executable not found. Please set the PROJ_DIR variable. For more information see: https://pyproj4.github.io/pyproj/stable/installation.html

@charliermarsh
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I think it's because they only publish ARM Wheels for macOS 14 and later, but I assume if you're on an M1 you're on some version earlier than macOS 14? In which case, you have to build from source, and that source build is failing for reasons that are specific to the package. It looks like they provide some instructions in https://pyproj4.github.io/pyproj/stable/installation.html.

@charliermarsh charliermarsh added the question Asking for clarification or support label Oct 14, 2024
@paulf81
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paulf81 commented Oct 14, 2024

yes, I think you've pinpointed it, if I could ask a final question then to check my understanding, I'm looking into migrating from a workflow based on declaring a new conda environment and pip installing into it to one built around uv and virtual environments.

Expanding a little the example above (assuming things are a little more filled out but imagine essentially a similar test_repo package which only depends on pyproj), a sequence like this works:

conda create -n test_repo python
conda activate test_repo
pip install test_repo

So here I was thinking uv sync with the above pyproject.toml would accomplish much the same, but maybe I was missing some things conda was doing in the background to manage ARM issues?

@paulf81 paulf81 mentioned this issue Oct 14, 2024
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@charliermarsh
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What does pip install -vvv test_repo show you there? And pip debug --verbose?

@paulf81
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paulf81 commented Oct 14, 2024 •
edited
Loading

Want to start with a big thank you for responding to my questions!

To test this I made a small new folder for test_repo, with the files

.python-version:

3.10

(Side note is hit a similar version with pyarrow, but going back from python 3.12 to 3.10 resolved this one)

pyproject.toml:

[project]
name = "test_repo"
version = "0.1.0"
description = "Add your description here"
readme = "README.md"
requires-python = ">=3.10"
dependencies = [
    "pyproj"
]

And setup.py:

"""The setup script."""

from pathlib import Path

from setuptools import find_packages, setup

# Package meta-data.
NAME = "test_repo"
DESCRIPTION = (
    ".."
)
EMAIL = "xxx.xxx@xxx.com"
AUTHOR = "xxx"

# What packages are required for this module to be executed?
REQUIRED = [
    "pyproj"
]

EXTRAS = {

}

ROOT = Path(__file__).parent


setup_requirements = [
    # Placeholder
]

test_requirements = [
    # Placeholder
]

setup(
    name=NAME,
    version="0.1.0",
  
)

Running uv sync:

Using CPython 3.10.15
Removed virtual environment at: .venv
Creating virtual environment at: .venv
Resolved 3 packages in 11ms
error: Failed to prepare distributions
  Caused by: Failed to fetch wheel: pyproj==3.7.0
  Caused by: Build backend failed to determine requirements with `build_wheel()` (exit status: 1)

[stderr]
proj executable not found. Please set the PROJ_DIR variable. For more information see: https://pyproj4.github.io/pyproj/stable/installation.html

Running with conda and pip:

conda activate test_repo
uv pip install -vvv test_repo

yields:

(see later comments)

@charliermarsh
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From those logs, it looks like pip is actually installing this project, rather than your own local project! https://pypi.org/project/test-repo/

@charliermarsh
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I think you need pip install . instead or uv pip install . (from the ./test_repo directory).

@paulf81
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paulf81 commented Oct 14, 2024

yes sorry, just caught that, fixing now

@paulf81
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paulf81 commented Oct 14, 2024 •
edited
Loading

(not relavent)

@charliermarsh
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Hard to say how from these logs alone but it looks like pyproj is already installed in the Conda environment by the time you're running that command:

Requirement already satisfied: pyproj in /Users/pfleming/opt/anaconda3/envs/test_repo/lib/python3.12/site-packages (from test_repo==0.1.0) (3.7.0)

@paulf81
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paulf81 commented Oct 14, 2024

I will start fresh, sorry, one second,

@paulf81
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paulf81 commented Oct 14, 2024

(Removed a few thousand lines about skipping, finding in the middle)

Using pip 24.2 from /Users/pfleming/opt/anaconda3/envs/test_repo/lib/python3.10/site-packages/pip (python 3.10)
Non-user install because site-packages writeable
Created temporary directory: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-build-tracker-vv8vkx0a
Initialized build tracking at /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-build-tracker-vv8vkx0a
Created build tracker: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-build-tracker-vv8vkx0a
Entered build tracker: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-build-tracker-vv8vkx0a
Created temporary directory: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-install-4mszufiw
Created temporary directory: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-ephem-wheel-cache-kfs2_920
Processing /Users/pfleming/Projects/test_repo
Added file:///Users/pfleming/Projects/test_repo to build tracker '/private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-build-tracker-vv8vkx0a'
Created temporary directory: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-build-env-_06pzsjg
Installing build dependencies: started
Running command pip subprocess to install build dependencies
Using pip 24.2 from /Users/pfleming/opt/anaconda3/envs/test_repo/lib/python3.10/site-packages/pip (python 3.10)
Non-user install by explicit request
Created build tracker: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-build-tracker-vv8vkx0a
Entered build tracker: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-build-tracker-vv8vkx0a
Created temporary directory: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-install-xzb60v13
Created temporary directory: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-ephem-wheel-cache-ok_omjrs
1 location(s) to search for versions of setuptools:

Skipping link: none of the wheel's tags (cp313-cp313-win32) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/00/f2/2a116920db3496e3ff3c94d7d8d15da41374f35cfe1b9e79682eca500a61/pyproj-3.7.0-cp313-cp313-win32.whl (from https://pypi.org/simple/pyproj/) (requires-python:>=3.10)
Skipping link: none of the wheel's tags (cp313-cp313-win_amd64) are compatible (run pip debug --verbose to show compatible tags): https://files.pythonhosted.org/packages/f8/33/3c8c6302717096b54aa14ccbb271045ba04629e21cbf348f2f2dc94f69b4/pyproj-3.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/pyproj/) (requires-python:>=3.10)
Found link https://files.pythonhosted.org/packages/47/c2/0572c8e31aebf0270f15f3368adebd10fc473de9f09567a0743a3bc41c8d/pyproj-3.7.0.tar.gz (from https://pypi.org/simple/pyproj/) (requires-python:>=3.10), version: 3.7.0
Skipping link: not a file: https://pypi.org/simple/pyproj/
Given no hashes to check 49 links for project 'pyproj': discarding no candidates
Collecting pyproj (from test_repo==0.1.0)
Obtaining dependency information for pyproj from https://files.pythonhosted.org/packages/e4/fa/8a769da6bb8e26b1028c19d048b88373a40bd8e17a893e07b9889d1aed03/pyproj-3.7.0-cp310-cp310-macosx_12_0_x86_64.whl.metadata
Created temporary directory: /private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-unpack-6q9eq0se
Looking up "https://files.pythonhosted.org/packages/e4/fa/8a769da6bb8e26b1028c19d048b88373a40bd8e17a893e07b9889d1aed03/pyproj-3.7.0-cp310-cp310-macosx_12_0_x86_64.whl.metadata" in the cache
No cache entry available
No cache entry available
Starting new HTTPS connection (1): files.pythonhosted.org:443
https://files.pythonhosted.org:443 "GET /packages/e4/fa/8a769da6bb8e26b1028c19d048b88373a40bd8e17a893e07b9889d1aed03/pyproj-3.7.0-cp310-cp310-macosx_12_0_x86_64.whl.metadata HTTP/1.1" 200 31294
Downloading pyproj-3.7.0-cp310-cp310-macosx_12_0_x86_64.whl.metadata (31 kB)
Ignoring unknown cache-control directive: immutable
Updating cache with response from "https://files.pythonhosted.org/packages/e4/fa/8a769da6bb8e26b1028c19d048b88373a40bd8e17a893e07b9889d1aed03/pyproj-3.7.0-cp310-cp310-macosx_12_0_x86_64.whl.metadata"
etag object cached for 1209600 seconds
Caching due to etag
1 location(s) to search for versions of certifi:

Successfully installed certifi-2024.8.30 pyproj-3.7.0 test_repo-0.1.0
Remote version of pip: 24.2
Local version of pip: 24.2
Was pip installed by pip? False
Removed build tracker: '/private/var/folders/zl/d69s6z796rs4fw08fnxrl0qxydms74/T/pip-build-tracker-vv8vkx0a'

@charliermarsh
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Okay so from those logs, it looks like the difference is that Conda was installed as x86 (notice that it selected https://files.pythonhosted.org/packages/e4/fa/8a769da6bb8e26b1028c19d048b88373a40bd8e17a893e07b9889d1aed03/pyproj-3.7.0-cp310-cp310-macosx_12_0_x86_64.whl.metadata) whereas uv pip install is using the native ARM solution. It might be running under Rosetta.

@paulf81
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paulf81 commented Oct 14, 2024

Ok, yes, that makes a lot of sense. Appreciate very much your time and help! Will spend some more time now thinking about best way for us on this but much clearer now the difference. Thank you!

@charliermarsh
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No problem, thanks for being so responsive with my own questions.

@charliermarsh
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I'm going to close this as I think things are working as expected from our end, but you're welcome to ask more questions if they come up.

@charliermarsh charliermarsh self-assigned this Oct 14, 2024
@paulf81
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paulf81 commented Oct 14, 2024

That's perfect, thank you

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