broad-pan-ukb.yaml

Name: UK Biobank Pan-Ancestry Summary Statistics
Description: A multi-ancestry analysis of 7,221 phenotypes using a generalized mixed model association testing framework, spanning 16,119 genome-wide association studies. We provide standard meta-analysis across all populations and with a leave-one-population-out approach for each trait. The data are provided in tsv format (per phenotype) and Hail MatrixTable (all phenotypes and variants). Metadata is provided in phenotype and variant manifests.
Documentation: https://pan.ukbb.broadinstitute.org
Contact: ukb.diverse.gwas@gmail.com
ManagedBy: Analytic and Translational Genetics Unit, Massachusetts General Hospital and the Broad Institute
UpdateFrequency: Occasional
Tags:
  - aws-pds
  - genetic
  - genome wide association study
  - genomic
  - life sciences
  - population genetics
License: CC BY-4.0 (usage may be restricted by UK Biobank, more details on the "[Downloads page](https://pan.ukbb.broadinstitute.org/downloads)")
Resources:
  - Description: Summary statistics from Genome Wide Association Studies (GWASes) of multiple ancestries in the UK Biobank, in TSV and Hail formats
    ARN: arn:aws:s3:::pan-ukb-us-east-1
    Region: us-east-1
    Type: S3 Bucket
DataAtWork:
  Tutorials:
    - Title: Hail Tutorials
      URL: https://hail.is/docs/0.2/tutorials-landing.html
      AuthorName: Hail Team
      AuthorURL: https://hail.is/
  Tools & Applications:
    - Title: Hail
      URL: https://hail.is
      AuthorName: Hail Team
      AuthorURL: https://hail.is/
    - Title: Hail on AWS Quick Start
      URL: https://aws.amazon.com/quickstart/architecture/hail/
      AuthorName: Amazon Web Services and PrivoIT
  Publications:
    - Title: Pan-ancestry genetic analysis of the UK Biobank
      URL: https://pan.ukbb.broadinstitute.org/
      AuthorName: Pan UKBB Team