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Files are no longer available on miRBase ftp site #3724

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rchekaluk opened this issue Nov 1, 2023 · 0 comments · Fixed by chapmanb/cloudbiolinux#413

Contributor

rchekaluk commented Nov 1, 2023

The miRBase ftp site is no longer answering:

$ wget  --random-wait --retry-connrefused --no-check-certificate -nv -N -c ftp://mirbase.org/pub/mirbase/22/database_files/mirna_mature.txt.gz
failed: Connection timed out.

These files are affected:

./ggd-recipes/mm10/mirbase.yaml:        # wget --no-check-certificate -q -N -c ftp://mirbase.org/pub/mirbase/21/database_files/mirna_mature.txt.gz
./ggd-recipes/BDGP6/mirbase.yaml:        wget  --random-wait --retry-connrefused --no-check-certificate -nv -N -c ftp://mirbase.org/pub/mirbase/22/database_files/mirna_mature.txt.gz

The text was updated successfully, but these errors were encountered:

rchekaluk mentioned this issue

Update miRBase download URLs chapmanb/cloudbiolinux#413

Merged

naumenko-sa closed this as completed in chapmanb/cloudbiolinux#413

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