From 826c4f6ea1741e82415b06a0cc1b89a268f53eea Mon Sep 17 00:00:00 2001
From: xji3 <xji4@tulane.edu>
Date: Thu, 24 Oct 2024 20:30:34 -0500
Subject: [PATCH] action use partials only

---
 .../treedatalikelihood/BeagleDataLikelihoodDelegate.java        | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/dr/evomodel/treedatalikelihood/BeagleDataLikelihoodDelegate.java b/src/dr/evomodel/treedatalikelihood/BeagleDataLikelihoodDelegate.java
index 5a629cbd1d..6e11bd82c4 100644
--- a/src/dr/evomodel/treedatalikelihood/BeagleDataLikelihoodDelegate.java
+++ b/src/dr/evomodel/treedatalikelihood/BeagleDataLikelihoodDelegate.java
@@ -514,7 +514,7 @@ public BeagleDataLikelihoodDelegate(Tree tree,
                     throw new TaxonList.MissingTaxonException("Taxon, " + id + ", in tree, " + tree.getId() +
                             ", is not found in patternList, " + patternList.getId());
                 } else {
-                    if (useAmbiguities) {
+                    if (useAmbiguities || settings.useAction) {
                         setPartials(beagle, patternList, index, i);
                     } else {
                         setStates(beagle, patternList, index, i);