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Gather list of tools #1

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kostrykin opened this issue Jul 18, 2024 · 2 comments
Closed

Gather list of tools #1

kostrykin opened this issue Jul 18, 2024 · 2 comments
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BHEU24 Has been worked on at the BHEU2024 investigation This issue involves some search/research

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@kostrykin
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kostrykin commented Jul 18, 2024

Gather the list of tools available.

It should be possible to retrieve the list directly from the Galaxy CoDEX:
https://github.com/galaxyproject/galaxy_codex

If they have fixed the CI by now:
galaxyproject/galaxy_codex#152

We had a similar list of tools gathered at the BioHackathon Europe 2023, which by now is out of date: https://docs.google.com/spreadsheets/d/1bUJb9mmX7JfGMaK9gQJN-0AKrd0Hb0kq79X637lYVVk/edit#gid=165841450

@kostrykin kostrykin added this to BH2024 Jul 18, 2024
@kostrykin kostrykin converted this from a draft issue Jul 18, 2024
@kostrykin kostrykin added the investigation This issue involves some search/research label Jul 18, 2024
@onemaria onemaria assigned onemaria and unassigned onemaria Aug 20, 2024
@beatrizserrano
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We should update the list of tools in the tool panel at https://imaging.usegalaxy.eu/
There's something wrong with the list on the tool panel, I remember more tools being listed there. Also, we should consider renaming the category from "Imaging" to "Image Analysis" or "Image Processing" if that's possible.

@kostrykin
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kostrykin commented Nov 6, 2024

Here is the most recent list of tools from the Galaxy Codex project:
https://github.com/galaxyproject/galaxy_codex/blob/1da03e6728436c2644706191d035b103d885a36c/communities/imaging/resources/tools.tsv

To me it looks up to date (at least as up to date as of Sept 27).

I think we can close this issue then.

@kostrykin kostrykin self-assigned this Nov 6, 2024
@github-project-automation github-project-automation bot moved this from In progress to Done in BH2024 Nov 6, 2024
@kostrykin kostrykin added the BHEU24 Has been worked on at the BHEU2024 label Nov 8, 2024
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BHEU24 Has been worked on at the BHEU2024 investigation This issue involves some search/research
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