2023-08-01-spatialbio23.md

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sblanding	Spatial Biology at Scale | Seattle Sept 26, 2023	false	The inaugural Spatial Biology at Scale meeting will be held at the <u><a href="#" data-bs-toggle="modal" data-bs-target="#Location" >Foege South</a></u> building at the University of Washington.	immersive	false	false	false	false	Spatial-Bio-Archive	type theme height background_color overlay dark 1000px #123	registration_active registration_link content actions false https://docs.google.com/forms/d/e/1FAIpQLSfEQ4LPQT5-lrlgeNxaO_1OA2Pjxc6vXeyw94CFNRxfSIlp9A/viewform Registration Deadline: 09.18.2023<br>Poster Abstract Submission Deadline: 09.15.2023 text Speakers text Program	active images https://api.coarchitects.com/wp-content/uploads/2022/08/COJ148_N2145_print.jpg src https://facilities.uw.edu/blog/files/media/drumheller-bagley-hero.jpg src https://bpb-us-e1.wpmucdn.com/sites.uw.edu/dist/8/10119/files/2020/12/Foege_Hall-1241.jpg	sections title subtitle excerpt Location <div class="ratio ratio-4x3"><iframe src="https://www.google.com/maps/embed?pb=!1m18!1m12!1m3!1d671.9147319563219!2d-122.31313192402544!3d47.65219439318942!2m3!1f0!2f0!3f0!3m2!1i1024!2i768!4f13.1!3m3!1m2!1s0x549014ede4bdea51%3A0x5d0ff1cf2aed917f!2sWilliam%20H.%20Foege%20Hall%2C%203720%2015th%20Ave%20NE%2C%20Seattle%2C%20WA%2098105!5e0!3m2!1sen!2sus!4v1690266880096!5m2!1sen!2sus" width="800" height="600" style="border:0;" allowfullscreen="" loading="lazy" referrerpolicy="no-referrer-when-downgrade"></iframe></div> title subtitle children Speakers card title src url content Kevin Bishop https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png https://washington-seattle.digication.com/jonliu/Graduate_students Ph.D. student, <a href="https://washington-seattle.digication.com/jonliu/Home" target="_blank" rel="noreferrer noopener">Liu Lab</a>, UW Mechanical Engineering card title src url content Xiaoyin Chen https://alleninstitute.org/wp-content/themes/gmmb-allen/images/allen-logo.svg https://alleninstitute.org/person/xiaoyin-chen/ Assistant Investigator, Allen Institute for Brain Science card title src url content Adam Glaser https://alleninstitute.org/wp-content/themes/gmmb-allen/images/allen-logo.svg https://alleninstitute.org/person/adam-glaser/ Senior Scientist, Allen Institute for Neural Dynamics card title src url content Sam A. Golden https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png https://goldenneurolab.com/ Assistant Professor of Biological Structure, UW card title src url content Shachi Mittal https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png https://shachimittal.com/people.html Assistant Professor of Chemical Engineering, UW title card title src url content Eva K. Nichols https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png http://beliveau.io/team Postdoc, <a href="https://www.beliveau.io/" target="_blank" rel="noreferrer noopener">Beliveau</a> & <a href="https://shendure-web.gs.washington.edu/" target="_blank" rel="noreferrer noopener">Shendure</a> Labs, UW Genome Sciences card title src url content Chetan Poudel https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png https://sites.google.com/a/uw.edu/the-vaughan-group/group Postdoc, <a href="https://sites.google.com/a/uw.edu/the-vaughan-group/home" target="_blank" rel="noreferrer noopener">Vaughan</a> Lab, UW Chemistry card title src url content Robert Serfain https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png https://washington-seattle.digication.com/jonliu/Graduate_students Ph.D. student, <a href="https://washington-seattle.digication.com/jonliu/Home" target="_blank" rel="noreferrer noopener">Liu Lab</a>, UW Mechanical Engineering card title src url content Sharmishtaa Seshamani https://alleninstitute.org/wp-content/themes/gmmb-allen/images/allen-logo.svg https://alleninstitute.org/person/sharmishtaa-seshamani/ Computer Vision Manager, Allen Institute for Brain Science card title src url content Kelly Stevens https://uw-s3-cdn.s3.us-west-2.amazonaws.com/wp-content/uploads/sites/98/2014/09/07214451/W-Logo_Purple_Hex.png http://www.kellystevensscience.com/ Assistant Professor of Bioengineering, UW title subtitle program Program title time location Welcome from the organizers, announcements 09:00-09:15am Foege Auditorium title time location <b><i>Talk Session 1</i></b> <b>09:15-10:20am</i> <b>Foege Auditorium</b> title time location Introduction by <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Jonathan T.C. Liu</a>, University of Washington 09:15-09:20am Foege Auditorium title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Adam Glaser</a>, Allen Institute. "How to see the big and the small: imaging centimeter scale tissues with nanoscale resolution" 09:20-09:50am Foege Auditorium title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Kevin Bishop</a>, University of Washington. "Open-top light-sheet microscopy instrumentation for 3D pathology" 09:50-10:20am Foege Auditorium title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Sam A. Golden</a>, University of Washington. "A nuclear-localizing genetic tag strategy optimized for single-cell image segmentation and behavior compatibility" 10:20-10:50am Foege Auditorium title time location Coffee Break 10:50-11:15am Foege Atrium title time location <b><i>Talk Session 2</i></b> <b>11:15-12:20pm</b> <b>Foege Auditorium</b> title time location Introduction by <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Joshua C. Vaughan</a>, University of Washington 11:15-11:20am Foege Auditorium title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Eva K. Nichols</a>, University of Washington. "Section-free, antibody-free cell type detection" 11:20-11:50am Foege Auditorium title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Chetan Poudel</a>, University of Washington. "Studying the whole mouse kidney: lightsheet microscopy and deep-learning approaches" 11:50-12:20pm Foege Auditorium title time location Lunch 12:20-01:25pm Vista Café title time location <b><i>Talk Session 3</i></b> <b>01:25-03:00pm</b> <b>Foege Auditorium</b> title time location Introduction by <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">A. Murat Maga</a>, University of Washington & Seattle Children's 01:25-01:30pm Foege Auditorium title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Robert Serafin</a>, University of Washington. "Computational methods for non-destructive 3D pathology" 01:30-02:00pm Foege Auditorium title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Sharmishtaa Seshamani</a>, Allen Institute. "Cloud Pipelines for Large Scale Light Sheet Image Processing" 02:00-02:30pm Foege Auditorium title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Shachi Mittal</a>, University of Washington. "Optical and Molecular Profiling of Diseases using Imaging and Artificial Intelligence" 02:30-03:00pm Foege Auditorium title time location Coffee Break 03:00-03:20pm Foege Atrium title time location <b><i>Talk Session 4</i></b> <b>03:20-04:30pm</b> <b>Foege Auditorium</b> title time location Introduction by <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Garret Stuber</a>, University of Washington 03:20-03:25pm Foege Auditorium title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Xiaoyin Chen</a>, Allen Institute. "Whole-cortex in situ sequencing reveals peripheral input-dependent cell type-defined area identity" 03:25-03:55pm Foege Auditorium title time location <a href="#" data-bs-toggle="modal" data-bs-target="#Speakers">Kelly Stevens</a>, University of Washington. <i>Title TBD</i> 03:55-04:25pm Foege Auditorium title time location Closing remarks from the organizers 04:25-04:30pm Foege Auditorium title time location Poster session with refreshments 04:30-06:30pm Vista Café

Overview

Featured Topics

- Light sheet and confocal microscopy - Volumetric imaging - Spatial transcriptomics - 3D pathology - Optical probes - Labeling biomolecules in tissues - Machine learning and image analysis


Speakers

• Kevin Bishop (Ph.D. student, Liu Lab, UW Mechanical Engineering)
• Xiaoyin Chen (Assistant Investigator, Allen Institute for Brain Science)
• Adam Glaser (Senior Scientist, Allen Institute for Neural Dynamics)
• Sam A. Golden (Assistant Professor of Biological Structure, UW)
• Shachi Mittal (Assistant Professor of Chemical Engineering, UW)
• Eva K. Nichols (Postdoc, Beliveau & Shendure Labs, UW Genome Sciences)
• Chetan Poudel (Postdoc, Vaughan Lab, UW Chemistry)
• Robert Serafin (Ph.D. student, Liu Lab, UW Mechanical Engineering)
• Sharmishtaa Seshamani (Computer Vision Manager, Allen Institute for Brain Science)
• Kelly Stevens (Assistant Professor of Bioengineering, UW)

Organizing Committee

• Brian J. Beliveau (UW Genome Sciences)
• Jonathan T.C. Liu (UW Mechanical Engineering)
• Joshua C. Vaughan (UW Chemistry)

Sponsors