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chore(ssz): Cleanup #1612

Merged
merged 1 commit into from
Jun 25, 2024
Merged

chore(ssz): Cleanup #1612

merged 1 commit into from
Jun 25, 2024

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calbera
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@calbera calbera commented Jun 25, 2024

Summary by CodeRabbit

  • New Features

    • Introduced the MixinLength function to calculate hashes based on input elements and their lengths.
  • Improvements

    • Enhanced hashing performance and parallel processing with optimized functions and improved error handling.
    • Updated the Merkleize function for better initialization of the hasher variable, improving efficiency.
  • Refactor

    • Moved the Buffer interface to a new package for better organization.
    • Renamed packages and updated import paths for buffer operations.
    • Refactored the BuildParentTreeRoots function to use optimized parallel hashing.
  • Tests

    • Added new test functions and benchmarks for hashing functionalities and performance.
    • Introduced helper functions to support testing and ensure hashing method equivalence.

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coderabbitai bot commented Jun 25, 2024

Walkthrough

The code changes primarily involve moving the Buffer interface from the merkle package to the bytes package, adding the Get method, planning for a Put method, and updating relevant references. Enhancements were added for hashing and parallel processing in the merkle package, including new constants, functions, and improved error handling. Unit tests were updated to reflect these changes, and new test cases were added to ensure functionality and performance.

Changes

Files Change Summary
mod/primitives/pkg/bytes/buffer.go, buffer_test.go Moved Buffer interface from merkle to bytes; added Get method; renamed package and imports from merkle_test to bytes_test.
mod/primitives/pkg/merkle/hasher.go, hasher_test.go Introduced new constants, structs, and functions for improved hashing and parallel processing; updated tests with new arguments.
mod/primitives/pkg/ssz/merkleize.go Changed Merkleize function to use bytes.NewSingleuseBuffer and merkle.BuildParentTreeRoots.
mod/primitives/pkg/merkle/tree.go Added MixinLength function for calculating hash based on input elements and lengths using gohashtree.

Sequence Diagram

sequenceDiagram
    participant User
    participant Merkle
    participant Bytes
    participant NewHasher
    User->>Merkle: Request Merkle Tree Root
    Merkle->>Bytes: Initialize Buffer
    Bytes-->>Merkle: Provide Buffer
    Merkle->>NewHasher: Create with Buffer and Hash Function
    NewHasher-->>Merkle: Return Hasher
    Merkle->>Merkle: Build Parent Tree Roots
    Merkle->>User: Return Merkle Tree Root
Loading

Poem

In bytes and hashes, our code does sway,
Buffers in bytes found a new display.
Trees of Merkle, swift now they hum,
Parallel threads, faster they become.
Tiny changes, big gains observed,
In our code, order is preserved.

🌐🚀


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@calbera calbera marked this pull request as ready for review June 25, 2024 19:50
@itsdevbear itsdevbear changed the title bet chore(ssz): Cleanup Jun 25, 2024
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Actionable comments posted: 6

Review details

Configuration used: CodeRabbit UI
Review profile: ASSERTIVE

Commits

Files that changed from the base of the PR and between cb8b352 and 84d2dfd.

Files selected for processing (6)
  • mod/primitives/pkg/bytes/buffer.go (1 hunks)
  • mod/primitives/pkg/bytes/buffer_test.go (1 hunks)
  • mod/primitives/pkg/merkle/hasher.go (3 hunks)
  • mod/primitives/pkg/merkle/hasher_test.go (6 hunks)
  • mod/primitives/pkg/merkle/tree.go (2 hunks)
  • mod/primitives/pkg/ssz/merkleize.go (2 hunks)
Additional comments not posted (9)
mod/primitives/pkg/bytes/buffer.go (1)

21-21: Approved package declaration change.

The change of the package from merkle to bytes aligns with the restructuring aimed at making buffer management more modular.

mod/primitives/pkg/bytes/buffer_test.go (3)

21-21: Approved package declaration change in test file.

The update of the package declaration from merkle_test to bytes_test is consistent with the move of the Buffer interface.


28-28: Approved import path update.

The import path change from merkle to bytes correctly reflects the new location of the Buffer interface.


32-37: Test function updates are correct.

The updates to the getBuffer function calls align with the changes in the buffer implementation. Ensuring that the tests cover both reusable and singleuse scenarios is good for maintaining robustness.

mod/primitives/pkg/merkle/tree.go (1)

224-236: Review of MixinLength function.

The MixinLength function correctly computes a hash based on the input element and its length. However, there's a TODO comment about moving this function to the ssz package. It's important to track this to ensure it's relocated appropriately to maintain modular design.

mod/primitives/pkg/merkle/hasher.go (1)

46-60: Review of Hasher struct and NewHasher function.

The Hasher struct is well-defined, encapsulating both the buffer and hasher function. The NewHasher function initializes these correctly. This setup facilitates the reusability and modularity of the hashing process.

mod/primitives/pkg/ssz/merkleize.go (1)

252-253: Review of updated Merkleize function.

The update to use bytes.NewSingleuseBuffer and merkle.BuildParentTreeRoots in the Merkleize function is correct and reflects the changes in buffer management and hashing functions. This should enhance the efficiency of the merkleization process.

mod/primitives/pkg/merkle/hasher_test.go (2)

301-310: Clarify error handling expectations in requireGoHashTreeEquivalence.

The test checks for errors inconsistently. It should either always expect errors or handle them uniformly. Clarifying the expected behavior in the case of discrepancies between merkle.BuildParentTreeRootsWithNRoutines and gohashtree.Hash would improve the test's reliability.

Consider revising the error handling strategy to ensure consistency across all scenarios.


260-269: Verify the handling of division by zero in BuildParentTreeRootsWithNRoutines.

This test aims to check the division by zero scenario by setting n to zero. However, the expectation is not clear if it should error out or handle gracefully. The test expects no error, which might not be the intended behavior if division by zero should be an error.

Verification successful

Verify the handling of division by zero in BuildParentTreeRootsWithNRoutines.

The implementation of BuildParentTreeRootsWithNRoutines includes a check to prevent division by zero by using max(n, 1). This ensures that the function handles the case when n is set to zero gracefully without causing a division by zero error.

  • The relevant code snippet:
    // Otherwise parallelize the hashing process for large inputs.
    // Take the max(n, 1) to prevent division by 0.
Scripts executed

The following scripts were executed for the analysis:


Script:

#!/bin/bash
# Description: Confirm the expected behavior when `n` is set to zero in `BuildParentTreeRootsWithNRoutines`.
# Expect: Clear documentation or comments in the implementation of `BuildParentTreeRootsWithNRoutines` regarding how division by zero is handled.

rg --type go 'func BuildParentTreeRootsWithNRoutines' mod/primitives/pkg/merkle/

Length of output: 158



Script:

#!/bin/bash
# Description: Retrieve the implementation of the `BuildParentTreeRootsWithNRoutines` function to verify how it handles the case when `n` is zero.

ast-grep --lang go --pattern 'func BuildParentTreeRootsWithNRoutines($_, $_, $_) {
  $$$
}' mod/primitives/pkg/merkle/hasher.go

Length of output: 129



Script:

#!/bin/bash
# Description: Retrieve the implementation of the `BuildParentTreeRootsWithNRoutines` function to verify how it handles the case when `n` is zero.

rg --type go 'func BuildParentTreeRootsWithNRoutines' -A 20 mod/primitives/pkg/merkle/hasher.go

Length of output: 784

)

// Test NewRootWithMaxLeaves with empty leaves.
func TestNewRootWithMaxLeaves_EmptyLeaves(t *testing.T) {
buffer := getBuffer("reusable")
hasher := merkle.NewHasher(buffer)
hasher := merkle.NewHasher(buffer, gohashtree.Hash)
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Update import paths in test cases due to package changes.

The NewHasher function calls in the test cases still reference the old package path. This needs to be updated to reflect the new structure where Hasher is part of the bytes package.

- hasher := merkle.NewHasher(buffer, gohashtree.Hash)
+ hasher := bytes.NewHasher(buffer, gohashtree.Hash)

Also applies to: 56-56, 79-79, 103-103, 128-128

Comment on lines +160 to +196
for _, size := range sliceSizes {
t.Run(
fmt.Sprintf("Size%d", size*merkle.MinParallelizationSize),
func(t *testing.T) {
largeSlice := make(
[][32]byte, size*merkle.MinParallelizationSize,
)
secondLargeSlice := make(
[][32]byte, size*merkle.MinParallelizationSize,
)
hash1 := make([][32]byte, size*merkle.MinParallelizationSize)
hash2 := make([][32]byte, size*merkle.MinParallelizationSize)
var err error

err = merkle.BuildParentTreeRoots(hash1, largeSlice)
require.NoError(t, err)

err = merkle.BuildParentTreeRoots(hash2, secondLargeSlice)
require.NoError(t, err)

require.Equal(
t,
len(hash1),
len(hash2),
"Hash lengths should be equal",
)
for i, r := range hash1 {
require.Equal(
t,
r,
hash2[i],
fmt.Sprintf("Hash mismatch at index %d", i),
)
}
},
)
}
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Optimize the test setup in Test_HashTreeRootEqualInputs.

The test setup is creating large slices multiple times which might be inefficient. Consider using a setup function to initialize these slices once and reuse them across different subtests.

func setupLargeSlices(size int) ([][32]byte, [][32]byte) {
    largeSlice := make([][32]byte, size*merkle.MinParallelizationSize)
    secondLargeSlice := make([][32]byte, size*merkle.MinParallelizationSize)
    return largeSlice, secondLargeSlice
}

Then, use this setup function in your subtests.

Comment on lines +29 to +34
type Buffer[RootT ~[32]byte] interface {
// Get returns a slice of roots of the given size.
Get(size int) []RootT

// TODO: add a Put method to return the buffer back for multi-threaded use.
}
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Consider implementing the Put method soon.

The Buffer interface now includes a TODO for adding a Put method, which is crucial for efficient multi-threaded use. Implementing this method would help manage buffer reuse effectively, reducing garbage collection overhead.

Would you like assistance in designing the Put method to ensure thread safety and efficiency?


// TODO: add a Put method to return the buffer back for multi-threaded use.
}

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Consider adding thread safety to reusableBuffer.

The comment indicates a planned addition of a mutex for multi-thread safety. It's important to implement this soon to avoid potential data races when the buffer is accessed concurrently.

+ import "sync"

  type reusableBuffer[RootT ~[32]byte] struct {
      internal []RootT
+     mutex sync.Mutex
  }
Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
import "sync"
type reusableBuffer[RootT ~[32]byte] struct {
internal []RootT
mutex sync.Mutex
}

Comment on lines +34 to +44
const (
// MinParallelizationSize is the minimum size of the input list that
// should be hashed using the default method. If the input list is smaller
// than this size, the overhead of parallelizing the hashing process is.
//
// TODO: This value is arbitrary and should be benchmarked to find the
// optimal value.
MinParallelizationSize = 5000
// two is a constant to make the linter happy.
two = 2
)
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Review of constants for parallel processing.

The introduction of MinParallelizationSize and the constant two are well-documented. However, there's a TODO about benchmarking MinParallelizationSize which should be addressed to optimize performance.

Please ensure that benchmarking is conducted to find the optimal value for MinParallelizationSize.

Comment on lines +108 to +123
// BuildParentTreeRoots calls BuildParentTreeRootsWithNRoutines with the
// number of routines set to runtime.GOMAXPROCS(0)-1.
func BuildParentTreeRoots[RootT ~[32]byte](
outputList, inputList []RootT,
) error {
err := BuildParentTreeRootsWithNRoutines(
//#nosec:G103 // on purpose.
*(*[][32]byte)(unsafe.Pointer(&outputList)),
//#nosec:G103 // on purpose.
*(*[][32]byte)(unsafe.Pointer(&inputList)),
runtime.GOMAXPROCS(0)-1,
)

// Convert out back to []RootT using unsafe pointer cas
return err
}
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Review of BuildParentTreeRoots function.

The function now delegates to BuildParentTreeRootsWithNRoutines, optimizing for parallel processing. The use of unsafe pointers is marked clearly, which is good for future audits but should be handled with care.

Ensure that the use of unsafe pointers is continuously reviewed and audited to prevent security vulnerabilities.

@itsdevbear itsdevbear merged commit 6533872 into main Jun 25, 2024
@itsdevbear itsdevbear deleted the cal/mem-imprs branch June 25, 2024 19:59
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2 participants