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giotto.dataset.html
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<!DOCTYPE html>
<html>
<head>
<title>Dataset examples for Giotto</title>
<meta charset="utf-8">
<meta name="viewport" content="initial-scale=1.0, user-scalable=no">
<meta name="apple-mobile-web-app-capable", content="yes">
<script src="js/jquery.min.js"></script>
<script src="js/jquery-ui.min.js"></script>
<link rel="stylesheet" href="css/jquery-ui.min.css">
<link rel="stylesheet" href="css/bootstrap.4.1.0.min.css">
<link rel="stylesheet" href="css/carousel.css">
<link rel="stylesheet" href="css/prism.css">
<link rel="stylesheet" href="css/giotto.css">
<script src="js/bootstrap.4.1.0.min.js"></script>
<script src="js/carousel.js"></script>
<script src="js/prism.js"></script>
<script src="js/giotto.js"></script>
</head>
<body data-spy="scroll" data-target="#nex2" data-offset="80">
<nav class="navbar navbar-expand-lg navbar-light bg-light">
<a class="navbar-brand" href="#">Giotto</a>
<button class="navbar-toggler" type="button" data-toggle="collapse" data-target="#navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation">
<span class="navbar-toggler-icon"></span>
</button>
<div class="collapse navbar-collapse" id="navbarSupportedContent">
<ul class="navbar-nav mr-auto">
<li class="nav-item active">
<a class="nav-link" href="giotto.html">Home</a>
</li>
<li class="nav-item">
<a class="nav-link" href="documentation2.html">Documentation</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.install.2.html">Installation</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.dataset.html">Dataset Examples</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.download.html">Download</a>
</li>
</ul>
</div>
</nav>
<div class="container-fluid">
<div class="row">
<nav class="col-md-2 d-none d-md-block bg-light sidebar">
<div class="sidebar-sticky">
<ul class="nav flex-column">
<li class="nav-item">
<a class="nav-link active" href="giotto.dataset.html">
Main page <span class="sr-only">(current)</span>
</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.osmFISH.html">
osmFISH dataset
</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.slideseq.html">
slideSeq part 1
</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.slideseq2.html">
slideSeq part 2
</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.cycif.html">
cyCIF dataset
</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.seqfish.html">
seqFISH+ dataset
</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.codex.html">
CODEX spleen
</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.visium.brain.html">
Visium brain
</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.visium.kidney.html">
Visium kidney
</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.merfish.html">
merFISH hypothalamus
</a>
</li>
<li class="nav-item">
<a class="nav-link" href="giotto.starmap.html">
STARmap dataset
</a>
</li>
</ul>
</div>
</nav>
<main role="main" class="col-md-9 ml-sm-auto col-lg-10 pt-3 px-4">
<div class="d-flex justify-content-between flex-wrap flex-md-nowrap align-items-center pb-2 mb-3 border-bottom">
<h1 class="h2">Dataset examples</h1>
</div>
<!--
<nav id="nex2" class="navbar sticky-top navbar-light bg-light">
<ul class="nav nav-pills">
<li class="nav-item">
<a class="nav-link active" href="#s_copy_js_css">giotto_copy_js_css</a>
</li>
<li class="nav-item">
<a class="nav-link" href="#s_setup_image">giotto_setup_image</a>
</li>
<li class="nav-item">
<a class="nav-link" href="#s_step1_modify_json">giotto_step1_modify_json</a>
</li>
<li class="nav-item">
<a class="nav-link" href="#s_setup_viewer">giotto_setup_viewer</a>
</li>
<li class="nav-item">
<a class="nav-link" href="#s_step1_setup">smfish_step1_setup</a>
</li>
<li class="nav-item">
<a class="nav-link" href="#s_read_config">smfish_read_config</a>
</li>
</ul>
</nav>
-->
<h4>Check out one of these following tutorials</h4>
<table class="table">
<tbody>
<tr>
<td>
<a href="giotto.osmFISH.html">osmFISH</a>
</td>
</tr>
<tr>
<td>
<a href="giotto.slideseq.html">slideSeq - Part 1 cell type enrichment</a>
</td>
</tr>
<tr>
<td>
<a href="giotto.slideseq2.html">slideSeq - Part 2 clustering and spatial domain</a>
</td>
</tr>
<tr>
<td>
<a href="giotto.cycif.html">cyCIF dataset (PDAC tumors)</a>
</td>
</tr>
<tr>
<td>
<a href="giotto.seqfish.html">seqFISH+ dataset (SS cortex)</a>
</td>
</tr>
<tr>
<td>
<a href="giotto.merfish.html">merFISH hypothalamus</a>
</td>
</tr>
<tr>
<td>
<a href="giotto.starmap.html">STARmap visual cortex</a>
</td>
</tr>
<tr>
<td>
<a href="giotto.visium.brain.html">visium brain</a>
</td>
</tr>
<tr>
<td>
<a href="giotto.visium.kidney.html">visium kidney</a>
</td>
</tr>
<tr>
<td>
<a href="giotto.codex.html">CODEX spleen</a>
</td>
</tr>
</tbody>
</table>
<!--
<h4>To get help on Giotto Viewer</h4>
<table class="table">
<tbody>
<tr>
<td>
<a href="giotto.viewer.setup2.html">Visit a dataset setup instruction page for Giotto Viewer</a>
</td>
</tr>
<tr>
<td>
<a href="documentation.html">Browser the viewer usage manual</a>
</td>
</tr>
</tbody>
</table>
-->
</main>
</div>
</div>
</body>
</html>