diff --git a/tools/extract_genomic_dna/extract_genomic_dna.xml b/tools/extract_genomic_dna/extract_genomic_dna.xml
index 88ac3fb421c..e765bc382b3 100644
--- a/tools/extract_genomic_dna/extract_genomic_dna.xml
+++ b/tools/extract_genomic_dna/extract_genomic_dna.xml
@@ -1,4 +1,4 @@
-<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3+galaxy2">
+<tool id="Extract genomic DNA 1" name="Extract Genomic DNA" version="3.0.3+galaxy3">
     <description>using coordinates from assembled/unassembled genomes</description>
     <requirements>
         <requirement type="package" version="0.7.1">bx-python</requirement>
diff --git a/tools/gwastools/manhattan_plot.xml b/tools/gwastools/manhattan_plot.xml
index 546de7f05ca..1553a77dff0 100644
--- a/tools/gwastools/manhattan_plot.xml
+++ b/tools/gwastools/manhattan_plot.xml
@@ -1,4 +1,4 @@
-<tool id="gwastools_manhattan_plot" name="Manhattan plot" version="0.1.0" python_template_version="3.5">
+<tool id="gwastools_manhattan_plot" name="Manhattan plot" version="0.1.1" python_template_version="3.5">
     <description>Generate plots for use with GWAS pipelines</description>
     <xrefs>
         <xref type="bio.tools">gwastools</xref>