diff --git a/album_catalog_index.db b/album_catalog_index.db index fce1cc0..353dd08 100644 Binary files a/album_catalog_index.db and b/album_catalog_index.db differ diff --git a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/CHANGELOG.md b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/CHANGELOG.md old mode 100644 new mode 100755 index 9c71d50..b124b36 --- a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/CHANGELOG.md +++ b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/CHANGELOG.md @@ -4,6 +4,9 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## [0.1.1] - 2024-03-06 +Fix executable issue with gradlew + ## [0.1.0] - 2023-12-28 Initial version. diff --git a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/gradle/wrapper/gradle-wrapper.jar b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/gradle/wrapper/gradle-wrapper.jar old mode 100644 new mode 100755 diff --git a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/gradle/wrapper/gradle-wrapper.properties b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/gradle/wrapper/gradle-wrapper.properties old mode 100644 new mode 100755 diff --git a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/gradlew b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/gradlew old mode 100644 new mode 100755 diff --git a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/gradlew.bat b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/gradlew.bat old mode 100644 new mode 100755 diff --git a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/solution.py b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/solution.py old mode 100644 new mode 100755 index 9e339e1..15712b9 --- a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/solution.py +++ b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/solution.py @@ -4,6 +4,7 @@ def install(): import subprocess import shutil + import os from album.runner.api import get_app_path, get_package_path get_app_path().mkdir(exist_ok=True, parents=True) @@ -15,7 +16,9 @@ def install(): shutil.copytree(get_package_path().joinpath('src'), get_app_path().joinpath('src')) shutil.copytree(get_package_path().joinpath('gradle'), get_app_path().joinpath('gradle')) - subprocess.run([(get_gradle_executable()), 'build', '-Dorg.gradle.internal.http.socketTimeout=300000'], + gradle_executable = get_gradle_executable() + os.chmod(gradle_executable, 0o755) + subprocess.run([gradle_executable, 'build', '-Dorg.gradle.internal.http.socketTimeout=300000'], cwd=get_app_path(), check=True) @@ -60,7 +63,7 @@ def is_file_arg(arg_name): setup( group="io.github.betaseg", name="cellsketch-add-filament-knossos", - version="0.1.0", + version="0.1.1", solution_creators=["Deborah Schmidt"], title="CellSketch: Add KNOSSOS filament", description="This solution adds a KNOSSOS filament XML file to an existing CellSketch project.", diff --git a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/solution.yml b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/solution.yml index 5cb6cca..81b9b25 100644 --- a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/solution.yml +++ b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/solution.yml @@ -29,22 +29,20 @@ args: (i.e. 255:255:0:255) name: color type: string -- description: "Filaments radius in \xCE\xBCm" +- description: "Filaments radius in \u03BCm" name: radius type: float - description: Threshold to count filament ends as connected in um name: thresholdConnectionFilamentEnds required: false type: float -changelog: 'Initial version. - - ' +changelog: Fix executable issue with gradlew cite: - doi: https://doi.org/10.1083/jcb.202010039 - text: "A. M\xC3\xBCller, D. Schmidt, C. S. Xu, S. Pang, J. V. D'Costa, S. Kretschmar,\ - \ C. M\xC3\xBCnster, T. Kurth, F. Jug, M. Weigert, H. F. Hess, M. Solimena; 3D\ - \ FIB-SEM reconstruction of microtubule-organelle interaction in whole primary\ - \ mouse \xCE\xB2 cells. J Cell Biol 1 February 2021; 220 (2): e202010039." + text: "A. M\xFCller, D. Schmidt, C. S. Xu, S. Pang, J. V. D'Costa, S. Kretschmar,\ + \ C. M\xFCnster, T. Kurth, F. Jug, M. Weigert, H. F. Hess, M. Solimena; 3D FIB-SEM\ + \ reconstruction of microtubule-organelle interaction in whole primary mouse \u03B2\ + \ cells. J Cell Biol 1 February 2021; 220 (2): e202010039." description: This solution adds a KNOSSOS filament XML file to an existing CellSketch project. group: io.github.betaseg @@ -55,6 +53,6 @@ tags: - cellsketch - segmentation - annotation -timestamp: '2023-12-28T20:32:34.219046' +timestamp: '2024-03-06T16:29:57.739098' title: 'CellSketch: Add KNOSSOS filament' -version: 0.1.0 +version: 0.1.1 diff --git a/solutions/io.github.betaseg/cellsketch-add-filament-knossos/src/main/java/Main.java b/solutions/io.github.betaseg/cellsketch-add-filament-knossos/src/main/java/Main.java old mode 100644 new mode 100755