[ADAM-1655] Move R package to bdgenomics.adam.

Resolves #1655.
bigdatagenomics · Oct 17, 2017 · e990313 · e990313
1 parent d9420dd
commit e990313
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Showing 13 changed files with 10 additions and 10 deletions.
diff --git a/adam-r/bdg.adam/DESCRIPTION → adam-r/bdgenomics.adam/DESCRIPTION b/adam-r/bdg.adam/DESCRIPTION → adam-r/bdgenomics.adam/DESCRIPTION
@@ -1,4 +1,4 @@
-Package: bdg.adam
+Package: bdgenomics.adam
 Type: Package
 Version: 0.23.0
 Title: R Frontend for Big Data Genomics/ADAM

diff --git a/adam-r/bdg.adam/NAMESPACE → adam-r/bdgenomics.adam/NAMESPACE b/adam-r/bdg.adam/NAMESPACE → adam-r/bdgenomics.adam/NAMESPACE
diff --git a/adam-r/bdg.adam/R/adam-context.R → adam-r/bdgenomics.adam/R/adam-context.R b/adam-r/bdg.adam/R/adam-context.R → adam-r/bdgenomics.adam/R/adam-context.R
diff --git a/adam-r/bdg.adam/R/generics.R → adam-r/bdgenomics.adam/R/generics.R b/adam-r/bdg.adam/R/generics.R → adam-r/bdgenomics.adam/R/generics.R
diff --git a/adam-r/bdg.adam/R/rdd.R → adam-r/bdgenomics.adam/R/rdd.R b/adam-r/bdg.adam/R/rdd.R → adam-r/bdgenomics.adam/R/rdd.R
diff --git a/adam-r/bdg.adam/tests/testthat.R → adam-r/bdgenomics.adam/tests/testthat.R b/adam-r/bdg.adam/tests/testthat.R → adam-r/bdgenomics.adam/tests/testthat.R
@@ -16,6 +16,6 @@
 # limitations under the License.
 #
 library(testthat)
-library(bdg.adam)
+library(bdgenomics.adam)
 
-test_check("bdg.adam")
+test_check("bdgenomics.adam")
diff --git a/adam-r/bdg.adam/tests/testthat/helpers.R → .../bdgenomics.adam/tests/testthat/helpers.R b/adam-r/bdg.adam/tests/testthat/helpers.R → .../bdgenomics.adam/tests/testthat/helpers.R
diff --git a/...dg.adam/tests/testthat/test_adamContext.R → ...cs.adam/tests/testthat/test_adamContext.R b/...dg.adam/tests/testthat/test_adamContext.R → ...cs.adam/tests/testthat/test_adamContext.R
@@ -15,7 +15,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 #
-library(bdg.adam)
+library(bdgenomics.adam)
 
 context("basic ADAM context functions")
 

diff --git a/.../tests/testthat/test_alignmentRecordRdd.R → .../tests/testthat/test_alignmentRecordRdd.R b/.../tests/testthat/test_alignmentRecordRdd.R → .../tests/testthat/test_alignmentRecordRdd.R
@@ -15,7 +15,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 #
-library(bdg.adam)
+library(bdgenomics.adam)
 
 context("manipulating alignmentrecords")
 

diff --git a/...bdg.adam/tests/testthat/test_featureRdd.R → ...ics.adam/tests/testthat/test_featureRdd.R b/...bdg.adam/tests/testthat/test_featureRdd.R → ...ics.adam/tests/testthat/test_featureRdd.R
@@ -15,7 +15,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 #
-library(bdg.adam)
+library(bdgenomics.adam)
 
 context("manipulating features")
 

diff --git a/...dg.adam/tests/testthat/test_genotypeRdd.R → ...cs.adam/tests/testthat/test_genotypeRdd.R b/...dg.adam/tests/testthat/test_genotypeRdd.R → ...cs.adam/tests/testthat/test_genotypeRdd.R
@@ -15,7 +15,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 #
-library(bdg.adam)
+library(bdgenomics.adam)
 
 context("manipulating genotypes")
 

diff --git a/...bdg.adam/tests/testthat/test_variantRdd.R → ...ics.adam/tests/testthat/test_variantRdd.R b/...bdg.adam/tests/testthat/test_variantRdd.R → ...ics.adam/tests/testthat/test_variantRdd.R
@@ -15,7 +15,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 #
-library(bdg.adam)
+library(bdgenomics.adam)
 
 context("manipulating variants")
 

diff --git a/adam-r/pom.xml b/adam-r/pom.xml
@@ -33,7 +33,7 @@
               <arguments>
                 <argument>CMD</argument>
                 <argument>build</argument>
-                <argument>bdg.adam/</argument>
+                <argument>bdgenomics.adam/</argument>
               </arguments>
             </configuration>
           </execution>
@@ -48,7 +48,7 @@
               <arguments>
                 <argument>CMD</argument>
                 <argument>check</argument>
-                <argument>bdg.adam/</argument>
+                <argument>bdgenomics.adam/</argument>
               </arguments>
             </configuration>
           </execution>