how to config kryo.registrator programmatically

[Fei-Guang]

hello,

it has no problem to run the application by config via command line
SparkSubmit --conf spark.kryo.registrator=org.bdgeno mics.adam.serialization.ADAMKryoRegistrator --conf spark.serializer=org.apache.s park.serializer.KryoSerializer --class org.apache.spark.examples.SparkPi .\adam2 -1.jar

but it report java.io.NotSerializableException: org.bdgenomics.formats.avro.AlignmentRecord
when run
SparkSubmit --class org.apache.spark.examples.SparkPi .\adam2-1.jar

but i have configured it programmatically like the following:

val spark = SparkSession.builder.master("local[*]").appName("Anno BDG") .getOrCreate() //set new runtime options

     spark.conf.set("spark.kryo.registrator", "org.bdgenomics.adam.serialization.ADAMKryoRegistrator")
    spark.conf.set("spark.serializer", "org.apache.spark.serializer.KryoSerializer")

[Fei-Guang]

SparkSession.builder.config("spark.kryo.registrator", "org.bdgenomics.adam.serialization.ADAMKryoRegistrator")