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Add transform to fix chromosome prefixes to genomic RDDs and CLIs #1757

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fnothaft opened this issue Oct 10, 2017 · 2 comments
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Add transform to fix chromosome prefixes to genomic RDDs and CLIs #1757

fnothaft opened this issue Oct 10, 2017 · 2 comments
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enhancement pick me up!
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0.31.0

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@fnothaft
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Inspired by a tweet; Illumina's hap.py tool has a --fixchr option.
@heuermh
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heuermh commented Oct 10, 2017 •
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I added this for GFF3 files to dsh-bio recently
https://github.com/heuermh/dishevelled-bio/blob/master/tools/src/main/java/org/dishevelled/bio/tools/RenameReferences.java

Hacks with regular expressions, what could be better?

@heuermh heuermh mentioned this issue Jan 22, 2018
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heuermh commented Jan 6, 2020

Closing as WontFix

@heuermh heuermh closed this as completed Jan 6, 2020
@heuermh heuermh added this to the 0.31.0 milestone Jan 6, 2020
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