Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Improve handling of "*" sequences during BQSR #484

Closed
fnothaft opened this issue Nov 17, 2014 · 1 comment
Closed

Improve handling of "*" sequences during BQSR #484

fnothaft opened this issue Nov 17, 2014 · 1 comment
Labels
bug

Comments

@fnothaft
Copy link
Member

In SAM/BAM, the sequence and quality of a read can be set to "*" if the sequence/quality isn't stored. These reads aren't special cased during processing and cause an array out-of-bounds exception during BQSR. This issue was reported on the mailing list.
@fnothaft fnothaft added the bug label Nov 17, 2014
@fnothaft fnothaft mentioned this issue Mar 1, 2015
Closed
@fnothaft
Copy link
Member Author

I believe this was resolved by 4e30187#diff-82ce2bf869f57c75dbc357935c5d46fd.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
bug
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@fnothaft