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[ADAM-1655] Move R package to bdgenomics.adam. #1764

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Oct 17, 2017
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[ADAM-1655] Move R package to bdgenomics.adam. #1764

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2 changes: 1 addition & 1 deletion adam-r/bdg.adam/DESCRIPTION → adam-r/bdgenomics.adam/DESCRIPTION
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@@ -1,4 +1,4 @@
Package: bdg.adam
Package: bdgenomics.adam
Type: Package
Version: 0.23.0
Title: R Frontend for Big Data Genomics/ADAM
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0 adam-r/bdg.adam/NAMESPACE → adam-r/bdgenomics.adam/NAMESPACE
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0 adam-r/bdg.adam/R/adam-context.R → adam-r/bdgenomics.adam/R/adam-context.R
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0 adam-r/bdg.adam/R/generics.R → adam-r/bdgenomics.adam/R/generics.R
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0 adam-r/bdg.adam/R/rdd.R → adam-r/bdgenomics.adam/R/rdd.R
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4 changes: 2 additions & 2 deletions adam-r/bdg.adam/tests/testthat.R → adam-r/bdgenomics.adam/tests/testthat.R
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Expand Up @@ -16,6 +16,6 @@
# limitations under the License.
#
library(testthat)
library(bdg.adam)
library(bdgenomics.adam)

test_check("bdg.adam")
test_check("bdgenomics.adam")
0 adam-r/bdg.adam/tests/testthat/helpers.R → .../bdgenomics.adam/tests/testthat/helpers.R
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2 changes: 1 addition & 1 deletion ...dg.adam/tests/testthat/test_adamContext.R → ...cs.adam/tests/testthat/test_adamContext.R
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Expand Up @@ -15,7 +15,7 @@
# See the License for the specific language governing permissions and
# limitations under the License.
#
library(bdg.adam)
library(bdgenomics.adam)

context("basic ADAM context functions")

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2 changes: 1 addition & 1 deletion .../tests/testthat/test_alignmentRecordRdd.R → .../tests/testthat/test_alignmentRecordRdd.R
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Expand Up @@ -15,7 +15,7 @@
# See the License for the specific language governing permissions and
# limitations under the License.
#
library(bdg.adam)
library(bdgenomics.adam)

context("manipulating alignmentrecords")

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2 changes: 1 addition & 1 deletion ...bdg.adam/tests/testthat/test_featureRdd.R → ...ics.adam/tests/testthat/test_featureRdd.R
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Expand Up @@ -15,7 +15,7 @@
# See the License for the specific language governing permissions and
# limitations under the License.
#
library(bdg.adam)
library(bdgenomics.adam)

context("manipulating features")

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2 changes: 1 addition & 1 deletion ...dg.adam/tests/testthat/test_genotypeRdd.R → ...cs.adam/tests/testthat/test_genotypeRdd.R
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Expand Up @@ -15,7 +15,7 @@
# See the License for the specific language governing permissions and
# limitations under the License.
#
library(bdg.adam)
library(bdgenomics.adam)

context("manipulating genotypes")

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2 changes: 1 addition & 1 deletion ...bdg.adam/tests/testthat/test_variantRdd.R → ...ics.adam/tests/testthat/test_variantRdd.R
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Expand Up @@ -15,7 +15,7 @@
# See the License for the specific language governing permissions and
# limitations under the License.
#
library(bdg.adam)
library(bdgenomics.adam)

context("manipulating variants")

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4 changes: 2 additions & 2 deletions adam-r/pom.xml
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Expand Up @@ -33,7 +33,7 @@
<arguments>
<argument>CMD</argument>
<argument>build</argument>
<argument>bdg.adam/</argument>
<argument>bdgenomics.adam/</argument>
</arguments>
</configuration>
</execution>
Expand All @@ -48,7 +48,7 @@
<arguments>
<argument>CMD</argument>
<argument>check</argument>
<argument>bdg.adam/</argument>
<argument>bdgenomics.adam/</argument>
</arguments>
</configuration>
</execution>
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