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Removes the predicates package. #621

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Mar 16, 2015
Merged

Removes the predicates package. #621

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8917746
Follow on cleanup to 609. Removes the predicates package.
fnothaft Mar 16, 2015
444bca8
Moving parquet-scala from test scope so that it is accessible in the …
fnothaft Mar 16, 2015
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1 change: 0 additions & 1 deletion adam-apis/src/main/scala/org/bdgenomics/adam/apis/java/JavaADAMContext.scala
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Expand Up @@ -19,7 +19,6 @@ package org.bdgenomics.adam.apis.java

import org.apache.spark.SparkContext
import org.apache.spark.api.java.JavaSparkContext
import org.bdgenomics.adam.predicates.ADAMPredicate
import org.bdgenomics.adam.rdd.ADAMContext
import org.bdgenomics.adam.rdd.ADAMContext._
import org.bdgenomics.formats.avro._
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2 changes: 0 additions & 2 deletions adam-cli/src/main/scala/org/bdgenomics/adam/cli/PluginExecutor.scala
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Expand Up @@ -23,7 +23,6 @@ import org.apache.hadoop.mapreduce.Job
import org.apache.spark.SparkContext
import org.apache.spark.rdd.RDD
import org.bdgenomics.adam.plugins.{ AccessControl, ADAMPlugin }
import org.bdgenomics.adam.predicates.ADAMPredicate
import org.bdgenomics.adam.rdd.ADAMContext._
import org.bdgenomics.formats.avro.AlignmentRecord
import org.kohsuke.args4j.{ Argument, Option => Args4jOption }
Expand Down Expand Up @@ -118,5 +117,4 @@ class PluginExecutor(protected val args: PluginExecutorArgs) extends ADAMSparkCo

output(sc, results)
}

}
55 changes: 0 additions & 55 deletions adam-core/src/main/scala/org/bdgenomics/adam/predicates/ADAMPredicate.scala
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43 changes: 0 additions & 43 deletions adam-core/src/main/scala/org/bdgenomics/adam/predicates/AlignmentRecordConditions.scala
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89 changes: 0 additions & 89 deletions adam-core/src/main/scala/org/bdgenomics/adam/predicates/FieldCondition.scala
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29 changes: 0 additions & 29 deletions adam-core/src/main/scala/org/bdgenomics/adam/predicates/GenotypeConditions.scala
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27 changes: 0 additions & 27 deletions adam-core/src/main/scala/org/bdgenomics/adam/predicates/GenotypePredicates.scala
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26 changes: 0 additions & 26 deletions adam-core/src/main/scala/org/bdgenomics/adam/predicates/HighQualityReadPredicate.scala
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37 changes: 0 additions & 37 deletions adam-core/src/main/scala/org/bdgenomics/adam/predicates/LocusPredicate.scala
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22 changes: 0 additions & 22 deletions adam-core/src/main/scala/org/bdgenomics/adam/predicates/PredicateUtils.scala
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