From a3e334602959da37e0ecf848c92d10f049eae885 Mon Sep 17 00:00:00 2001
From: Leane Schlundt <lhecht@techfak.de>
Date: Wed, 24 Jan 2024 07:47:50 +0100
Subject: [PATCH] Add new svg annotation generation flags

---
 src/Console/Commands/GenerateMissing.php | 47 +++++++++++++++++++-----
 1 file changed, 37 insertions(+), 10 deletions(-)

diff --git a/src/Console/Commands/GenerateMissing.php b/src/Console/Commands/GenerateMissing.php
index 30083bc7..db853475 100644
--- a/src/Console/Commands/GenerateMissing.php
+++ b/src/Console/Commands/GenerateMissing.php
@@ -4,7 +4,9 @@
 
 use Biigle\ImageAnnotation;
 use Biigle\Modules\Largo\Jobs\GenerateImageAnnotationPatch;
+use Biigle\Modules\Largo\Jobs\GenerateImageAnnotationSVGPatch;
 use Biigle\Modules\Largo\Jobs\GenerateVideoAnnotationPatch;
+use Biigle\Modules\Largo\Jobs\GenerateVideoAnnotationSVGPatch;
 use Biigle\VideoAnnotation;
 use Carbon\Carbon;
 use File;
@@ -19,7 +21,7 @@ class GenerateMissing extends Command
      * @var string
      */
     protected $signature = 'largo:generate-missing {--dry-run} {--volume=} {--no-image-annotations} {--no-video-annotations} {--queue=} {--newer-than=}
-        {--older-than=}';
+        {--older-than=} {--only-image-svg-annotations} {--only-video-svg-annotations}';
 
     /**
      * The console command description.
@@ -63,6 +65,19 @@ public function handle()
         $storage = Storage::disk(config('largo.patch_storage_disk'));
         $queue = $this->option('queue') ?: config('largo.generate_annotation_patch_queue');
 
+        if ($this->option('only-image-svg-annotations')) {
+            $onlySVG = true;
+            $this->handleImageAnnotations($storage, $pushToQueue, $queue, $onlySVG);
+            return;
+        }
+
+        if ($this->option('only-video-svg-annotations')) {
+            $onlySVG = true;
+            $this->handleVideoAnnotations($storage, $pushToQueue, $queue, $onlySVG);
+            return;
+
+        }
+
         if (!$this->option('no-image-annotations')) {
             $this->handleImageAnnotations($storage, $pushToQueue, $queue);
         }
@@ -72,6 +87,7 @@ public function handle()
         if (!$this->option('no-video-annotations')) {
             $this->handleVideoAnnotations($storage, $pushToQueue, $queue);
         }
+
     }
 
     /**
@@ -81,7 +97,7 @@ public function handle()
      * @param bool $pushToQueue
      * @param string $queue
      */
-    protected function handleImageAnnotations($storage, $pushToQueue, $queue)
+    protected function handleImageAnnotations($storage, $pushToQueue, $queue, $onlySVG = false)
     {
         $annotations = ImageAnnotation::join('images', 'images.id', '=', 'image_annotations.image_id')
             ->when($this->option('volume'), function ($query) {
@@ -99,28 +115,35 @@ protected function handleImageAnnotations($storage, $pushToQueue, $queue)
         $progress = $this->output->createProgressBar($total);
         $this->info("Checking {$total} image annotations...");
 
-        $handleAnnotation = function ($annotation) use ($progress, $pushToQueue, $storage, $queue) {
+        $handleAnnotation = function ($annotation) use ($progress, $pushToQueue, $storage, $queue, $onlySVG) {
             $prefix = fragment_uuid_path($annotation->uuid);
             if (!$storage->exists("{$prefix}/{$annotation->id}.{$this->format}")) {
                 $this->count++;
-                if ($pushToQueue) {
+                if ($pushToQueue && !$onlySVG) {
                     GenerateImageAnnotationPatch::dispatch($annotation)
                         ->onQueue($queue);
                 }
             }
+            if (!$storage->exists("{$prefix}/{$annotation->id}.svg")) {
+                if ($pushToQueue) {
+                    GenerateImageAnnotationSVGPatch::dispatch($annotation)
+                        ->onQueue($queue);
+                }
+            }
             $progress->advance();
         };
 
         $annotations->eachById($handleAnnotation, 10000, 'image_annotations.id', 'id');
 
         $progress->finish();
-        
-        if($total === 0) {
+
+        if ($total === 0) {
             $this->info("\n");
             return;
         }
 
         $percent = round($this->count / $total * 100, 2);
+
         $this->info("\nFound {$this->count} image annotations with missing patches ({$percent} %).");
         if ($pushToQueue) {
             $this->info("Pushed {$this->count} jobs to queue {$queue}.");
@@ -134,7 +157,7 @@ protected function handleImageAnnotations($storage, $pushToQueue, $queue)
      * @param bool $pushToQueue
      * @param string $queue
      */
-    protected function handleVideoAnnotations($storage, $pushToQueue, $queue)
+    protected function handleVideoAnnotations($storage, $pushToQueue, $queue, $onlySVG = false)
     {
         $annotations = VideoAnnotation::join('videos', 'videos.id', '=', 'video_annotations.video_id')
             ->when($this->option('volume'), function ($query) {
@@ -149,14 +172,18 @@ protected function handleVideoAnnotations($storage, $pushToQueue, $queue)
         $progress = $this->output->createProgressBar($total);
         $this->info("Checking {$total} video annotations...");
 
-        $handleAnnotation = function ($annotation) use ($progress, $pushToQueue, $storage, $queue) {
+        $handleAnnotation = function ($annotation) use ($progress, $pushToQueue, $storage, $queue, $onlySVG) {
             $prefix = fragment_uuid_path($annotation->uuid);
             if (!$storage->exists("{$prefix}/v-{$annotation->id}.{$this->format}")) {
                 $this->count++;
-                if ($pushToQueue) {
+                if ($pushToQueue && !$onlySVG) {
                     GenerateVideoAnnotationPatch::dispatch($annotation)
                         ->onQueue($queue);
                 }
+                if ($pushToQueue) {
+                    GenerateVideoAnnotationSVGPatch::dispatch($annotation)
+                        ->onQueue($queue);
+                }
             }
             $progress->advance();
         };
@@ -165,7 +192,7 @@ protected function handleVideoAnnotations($storage, $pushToQueue, $queue)
 
         $progress->finish();
 
-        if($total === 0) {
+        if ($total === 0) {
             $this->info("\n");
             return;
         }