_pkgdown.yml

reference:
- title: "Preprocessing"
  desc: "Functions for preparing your data for `trac`."
- contents:
  - aggregate_to_level
  - tax_table_to_phylo
  - phylo_to_A
- title: "Main trac functionality"
  desc: >
    Functions for fitting `trac`, choosing tuning parameter,
    and making predictions
- contents:
  - trac
  - cv_trac
  - predict_trac
- title: "Plotting functions"
- title: "Sparse log contrast functions"
- contents:
  - sparse_log_contrast
  - cv_sparse_log_contrast
- contents:
  - plot_trac_path
  - plot_cv_trac
- title: "An example data set"
  desc: "A gut microbiome data set used in vignette"
- contents:
  - sCD14
- title: "Refitting functions"
  desc: >
    Functions for fitting unregularized versions subject to the sparsity
    constraints learned by trac or sparse log-contrast
- contents:
  - refit_trac
  - refit_sparse_log_contrast