Skip to content
This repository has been archived by the owner on Sep 11, 2024. It is now read-only.

Trouble implementing edited nameindex #40

Open
pragermh opened this issue Aug 21, 2019 · 1 comment
Open

Trouble implementing edited nameindex #40

pragermh opened this issue Aug 21, 2019 · 1 comment

Comments

@pragermh
Copy link
Collaborator

Hi,
I've added a record to the Dyntaxa-index, and get an exact match in the new image:
docker run --rm -it bioatlas/ala-dyntaxaindex:v0.3-Bifid-sh nameindexer -testSearch "Bifidobacteriaceae"
...
Match type: exactMatch

I have restarted services, and my new image seems to be used:
docker inspect nameindex
"Image": "bioatlas/ala-dyntaxaindex:v0.3-Bifid-sh",

I have deleted, re-loaded, re-processed and re-indexed my occurrence records.
Yet, my Bifidobacteriaceae-occurrence is matched as Bacteria only, i.e. my index seems not have been used for indexing after all.

What am I doing wrong?

@pragermh
Copy link
Collaborator Author

See branch issue-40-nameindexing, including mp-test-occ-data & mp-test-code. Edited index is in dyntaxa-index. Thanks.

Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant