meta.yaml

{% set name = "umi_tools" %}
{% set version = "1.1.5" %}
{% set sha256 = "2a87b75364ebe3e6ccf467d3b6d0501c458a48f3e6c8ab8b7c4dfb3fd7627fab" %}

package:
  name: {{ name }}
  version: {{ version }}

source:
  url: https://github.com/CGATOxford/UMI-tools/archive/refs/tags/{{ version }}.tar.gz
  sha256: {{ sha256 }}

build:
  number: 3
  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
  # python 3.12: error: 'PyLongObject' {aka 'struct _longobject'} has no member named 'ob_digit'
  skip: True  # [py == 312 ]
  entry_points:
    - umi_tools = umi_tools.umi_tools:main
  run_exports:
    - {{ pin_subpackage(name, max_pin="x") }}

requirements:
  build:
    - {{ compiler('c') }}
  host:
    - python
    - pip
  run:
    - python
    - matplotlib-base
    - scipy
    - regex
    - numpy >=1.7
    - pandas >=0.12.0
    - pysam >=0.16.0.1
    - future
    - pybktree

test:
  commands:
    - "umi_tools --help"

about:
  home: "https://github.com/CGATOxford/UMI-tools"
  license: MIT
  license_family: MIT
  license_file: LICENSE
  summary: "Tools for dealing with Unique Molecular Identifiers
            (UMIs) / Random Molecular Tags (RMTs)."
  dev_url: "https://github.com/CGATOxford/UMI-tools"
  doc_url: "https://umi-tools.readthedocs.io/en/latest"

extra:
  additional-platforms:
    - linux-aarch64
    - osx-arm64
  identifiers:
    - doi:10.1101/gr.209601.116
    - usegalaxy-eu:umi_tools_count
    - usegalaxy-eu:umi_tools_extract
    - usegalaxy-eu:umi_tools_group
    - usegalaxy-eu:umi_tools_whitelist
    - usegalaxy-eu:umi_tools_dedup