From 7f7dca85d0c48f914fdf6ec3f31e0d71ac7e03e7 Mon Sep 17 00:00:00 2001
From: mencian <joshua.zhuang@yahoo.com>
Date: Thu, 26 Sep 2024 15:33:29 -0500
Subject: [PATCH] infernal: add osx-arm64 build

---
 recipes/infernal/build.sh  |  8 ++++++--
 recipes/infernal/meta.yaml | 16 ++++++++++------
 2 files changed, 16 insertions(+), 8 deletions(-)

diff --git a/recipes/infernal/build.sh b/recipes/infernal/build.sh
index 96e0f326ebabc..712789d396a1e 100644
--- a/recipes/infernal/build.sh
+++ b/recipes/infernal/build.sh
@@ -2,9 +2,13 @@
 
 set -ex
 
+export M4="${BUILD_PREFIX}/bin/m4"
+export INCLUDE_PATH="${PREFIX}/include"
+export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib"
+
 grep -l -r "/usr/bin/perl" . | xargs sed -i.bak -e 's/usr\/bin\/perl/usr\/bin\/env perl/g'
 
-autoreconf -i
+autoreconf -if
 
 case $(uname -m) in
     "x86_64") 
@@ -19,6 +23,6 @@ case $(uname -m) in
         ;;
 esac
 
-./configure --prefix="${PREFIX}" "${ARCH_OPTS}"
+./configure --prefix="${PREFIX}" CC="${CC}" CFLAGS="${CFLAGS} -O3 -L${PREFIX}/lib" "${ARCH_OPTS}"
 make -j${CPU_COUNT}
 make install
diff --git a/recipes/infernal/meta.yaml b/recipes/infernal/meta.yaml
index 0bb3322d57752..b417e6e8c1c8d 100644
--- a/recipes/infernal/meta.yaml
+++ b/recipes/infernal/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: ad4ddae02f924ca7c85bc8c4a79c9f875af8df96aeb726702fa985cbe752497f
 
 build:
-  number: 2
+  number: 3
   run_exports:
     - {{ pin_subpackage(name, max_pin="x") }}
 
@@ -26,6 +26,9 @@ requirements:
     - libgomp  # [linux]
     - llvm-openmp  # [osx]
     - wget
+   run:
+    - libgomp  # [linux]
+    - llvm-openmp  # [osx]
 
 test:
   commands:
@@ -41,18 +44,19 @@ test:
     - cmstat -h
 
 about:
-  home: http://eddylab.org/infernal
-  license: BSD-3-Clause
+  home: "http://eddylab.org/infernal"
+  license: "BSD-3-Clause"
   license_family: BSD
   license_file: LICENSE
   summary: Infernal is for searching DNA sequence databases for RNA structure and sequence similarities.
-  description: Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities.
-  doc_url: http://eddylab.org/infernal/Userguide.pdf
-  dev_url: https://github.com/EddyRivasLab/infernal
+  description: "Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities."
+  doc_url: "http://eddylab.org/infernal/Userguide.pdf"
+  dev_url: "https://github.com/EddyRivasLab/infernal"
 
 extra:
   additional-platforms:
     - linux-aarch64
+    - osx-arm64
   identifiers:
     - doi:10.1093/bioinformatics/btt509
     - biotools:infernal