diff --git a/recipes/agfusion/meta.yaml b/recipes/agfusion/meta.yaml index 8aa1ba254810a..e75269053c624 100644 --- a/recipes/agfusion/meta.yaml +++ b/recipes/agfusion/meta.yaml @@ -1,5 +1,5 @@ -{% set version = "1.4.1" %} -{% set sha256 = "fd04591d764deeff69978f9d495c3baf854ccfba27366aa0ae4859ad85ca2c60" %} +{% set version = "1.4.3" %} +{% set sha256 = "0fdace7fad64713173cac049af3783bdb3db406d5a6dafd4cc0c1948d0724c8f" %} package: name: agfusion diff --git a/recipes/bactopia-teton/meta.yaml b/recipes/bactopia-teton/meta.yaml index d1b1ab3117925..4319a50a89122 100644 --- a/recipes/bactopia-teton/meta.yaml +++ b/recipes/bactopia-teton/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.4" %} +{% set version = "1.0.5" %} package: name: bactopia-teton @@ -12,7 +12,7 @@ build: source: url: https://github.com/bactopia/bactopia-teton/archive/v{{version}}.tar.gz - sha256: 648b476bcf15bc177df1a814d782d318ee6b78a38e2ccb8268c569cbd1576504 + sha256: 4340da1ca721850564dcc05491ee396d1f9a1bbf662de5ede12fa29c50c1f3be requirements: run: @@ -28,6 +28,7 @@ requirements: - pigz - python >=3.6,<3.11 - sed + - sizemeup >=1.0.2 - sra-human-scrubber >=2.2 test: diff --git a/recipes/bioconda-utils/meta.yaml b/recipes/bioconda-utils/meta.yaml index 49d272da820fb..c8a92fc0b1c12 100644 --- a/recipes/bioconda-utils/meta.yaml +++ b/recipes/bioconda-utils/meta.yaml @@ -1,6 +1,6 @@ {% set name = "bioconda-utils" %} -{% set version = "3.3.1" %} -{% set sha256 = "db6b99456a334b958ba61fcfc6e717e5f22848342f99fecb1f6f2b0113165054" %} +{% set version = "3.3.2" %} +{% set sha256 = "6c6dcac689a2fb0f8142546aa9021bfd620fe484e724e4844a2d2e55c337747c" %} package: name: {{ name }} @@ -21,7 +21,7 @@ build: requirements: host: - - python + - python <3.12 - pip run: - conda-forge-pinning 2024.06.01.05.54.15 diff --git a/recipes/blaze2/meta.yaml b/recipes/blaze2/meta.yaml index 329bd464af823..098c5e8149ec3 100644 --- a/recipes/blaze2/meta.yaml +++ b/recipes/blaze2/meta.yaml @@ -1,5 +1,5 @@ {% set name = "BLAZE2" %} -{% set version = "2.4.0" %} +{% set version = "2.5.0" %} package: name: {{ name|lower }} @@ -7,7 +7,7 @@ package: source: url: https://github.com/shimlab/BLAZE/archive/refs/tags/v{{ version }}.tar.gz - sha256: b4487873d1f4ae389feed54aa7d862ff3addc458c387d6fd0e3c9550c0a2037d + sha256: f47175997742562add1deb9524e468b6709e40c92f74165a1a0fe1897b2919fc build: number: 0 diff --git a/recipes/catfasta2phyml/meta.yaml b/recipes/catfasta2phyml/meta.yaml index 0127661fa44c0..44d06ac51bcaf 100644 --- a/recipes/catfasta2phyml/meta.yaml +++ b/recipes/catfasta2phyml/meta.yaml @@ -1,14 +1,16 @@ package: name: catfasta2phyml - version: "1.2.0" + version: "1.2.1" source: - url: https://github.com/nylander/catfasta2phyml/archive/refs/tags/v.1.2.0.tar.gz - sha256: f4ea5aef5aa21d15d84436262f06b79a004b7017ab7a433019fe903aec995fdb + url: https://github.com/nylander/catfasta2phyml/archive/refs/tags/v1.2.1.tar.gz + sha256: 2647985192b05df49e10bfce64d6843fe7916b0395199dfd2ac4f80910c5a91f build: number: 0 noarch: generic + run_exports: + - {{ pin_subpackage('catfasta2phyml', max_pin="x") }} requirements: run: diff --git a/recipes/cpstools/meta.yaml b/recipes/cpstools/meta.yaml index f8dbea9224cbb..e9c88674e0521 100644 --- a/recipes/cpstools/meta.yaml +++ b/recipes/cpstools/meta.yaml @@ -1,6 +1,6 @@ {% set name = "cpstools" %} -{% set version = "1.0.13" %} -{% set sha256 = "767f5739416f290726ed459bf82969b453ffd2c04aa9171e5dc7c842a8d6b81e" %} +{% set version = "2.0.0" %} +{% set sha256 = "1c2c729d4979402d9f7835dea70e47c77d2e2ef6b1e822cfd1e6e008f3b98ba1" %} package: name: {{ name|lower }} @@ -21,13 +21,14 @@ build: requirements: host: - - python >=3.10 + - python >=3.9 - poetry-core - pip run: - - python >=3.10.0 + - python >=3.9 - biopython >=1.84.0 - numpy >=1.26.4 + - tqdm >=4.66.5 test: imports: diff --git a/recipes/genomedata/meta.yaml b/recipes/genomedata/meta.yaml index 5959be0568f95..12a66928b7dc5 100644 --- a/recipes/genomedata/meta.yaml +++ b/recipes/genomedata/meta.yaml @@ -12,7 +12,7 @@ source: build: skip: True # [osx or py < 39] - number: 0 + number: 1 entry_points: - genomedata-close-data = genomedata._close_data:main - genomedata-erase-data = genomedata._erase_data:main @@ -45,7 +45,7 @@ requirements: - hdf5 - pytables >=3.4.3 - pybigwig - - path.py + - path - textinput - bedtools - ucsc-bigwigtobedgraph >=377 diff --git a/recipes/gtotree/meta.yaml b/recipes/gtotree/meta.yaml index 6955b5089cf72..3adba0cd806f8 100644 --- a/recipes/gtotree/meta.yaml +++ b/recipes/gtotree/meta.yaml @@ -1,5 +1,5 @@ {% set name = "GToTree" %} -{% set version = "1.8.6" %} +{% set version = "1.8.7" %} package: name: "{{ name|lower }}" @@ -7,7 +7,7 @@ package: source: url: https://github.com/AstrobioMike/GToTree/archive/v{{ version }}.tar.gz - sha256: 1712d9e18f128bbeeb585b1528a8e207c3a36cc7f1dbb7df66416ec0278d5a9a + sha256: 2ec94fa0bbcfa98edca126ee3446ab7fa8982cd746604b371f74a125e3e44435 build: number: 0 diff --git a/recipes/gxf2bed/meta.yaml b/recipes/gxf2bed/meta.yaml index a0b0d0160416c..61af4d475731e 100644 --- a/recipes/gxf2bed/meta.yaml +++ b/recipes/gxf2bed/meta.yaml @@ -1,5 +1,5 @@ {% set name = "gxf2bed" %} -{% set version = "0.2.2" %} +{% set version = "0.2.3" %} package: name: gxf2bed @@ -7,7 +7,7 @@ package: source: url: https://github.com/alejandrogzi/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz - sha256: ee500e08e8c94b2663ea511482d6520300cb81c9cbbb05a288563e4a808f5377 + sha256: 1f8358a972bded0c4906bf03532ba4ee9f7fc6bf9b84063e4b25b98f37ced45f build: number: 0 diff --git a/recipes/metabuli/meta.yaml b/recipes/metabuli/meta.yaml index 0d6ed66393dbf..474fe1ebaeca8 100644 --- a/recipes/metabuli/meta.yaml +++ b/recipes/metabuli/meta.yaml @@ -1,12 +1,12 @@ -{% set version = "1.0.5" %} -{% set sha256 = "c84a4e2436904f0cbea7126abf2a5f665a870735c8af786883e10f3f872bda28" %} +{% set version = "1.0.8" %} +{% set sha256 = "cc7e496ff82f00b56ef59aa2a04fa572a2025225b0558e0df144f166fade82d4" %} package: name: metabuli version: {{ version }} build: - number: 2 + number: 0 run_exports: - {{ pin_subpackage('metabuli', max_pin="x") }} diff --git a/recipes/nanovar/meta.yaml b/recipes/nanovar/meta.yaml index 2f73c6d289332..1e0dbbfc3bd97 100644 --- a/recipes/nanovar/meta.yaml +++ b/recipes/nanovar/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.8.0" %} +{% set version = "1.8.1" %} package: name: nanovar @@ -6,7 +6,7 @@ package: source: url: https://pypi.io/packages/source/n/nanovar/nanovar-{{ version }}.tar.gz - sha256: 966117fc5667639dee4910823481037dc451ee972b3afdf93786f3f736eb120b + sha256: c75159f86a4043f5ba37c4ea16b9c5953e44d7a1c1dd854de7928464bed83bc9 build: skip: True # [py2k or osx or py > 39] @@ -23,7 +23,7 @@ requirements: - python run: - python - - numpy >=1.17.3 + - numpy >=1.17.3, <2.0.0 - scipy >=1.2.1 - biopython >=1.82 - pybedtools >=0.8.2 diff --git a/recipes/ont-modkit/meta.yaml b/recipes/ont-modkit/meta.yaml index 9f45eb5a76e54..f6a36fb5d4699 100644 --- a/recipes/ont-modkit/meta.yaml +++ b/recipes/ont-modkit/meta.yaml @@ -1,6 +1,6 @@ {% set name = "ont-modkit" %} -{% set version = "0.4.0" %} -{% set sha256 = "a4a304f00f350074b50fb3c71ab8756df0344e0f77a55c443aa48a91c42195bf" %} +{% set version = "0.4.1" %} +{% set sha256 = "45cd7d4ee69092db7412a15f02799c3118bf5fa4e40e193e30e8c65c4f762f79" %} package: name: {{ name }} diff --git a/recipes/parsnp/meta.yaml b/recipes/parsnp/meta.yaml index d99dc6f3bfb79..893029bbcf967 100644 --- a/recipes/parsnp/meta.yaml +++ b/recipes/parsnp/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "2.0.5" %} +{% set version = "2.0.6" %} package: name: parsnp @@ -6,7 +6,7 @@ package: source: url: "https://github.com/marbl/parsnp/archive/refs/tags/v{{version}}.tar.gz" - sha256: 1d23695d0d624fa17e02c43b1d730200e526c17a48615593f75ee8fc35402489 + sha256: cde5fb488418764e87942afa747002d01d35e80d7c3a44a71bb2d1bd4d69ed0c build: number: 0 diff --git a/recipes/pybiolib/meta.yaml b/recipes/pybiolib/meta.yaml index ea22be4adc294..5b42a9cd463cf 100644 --- a/recipes/pybiolib/meta.yaml +++ b/recipes/pybiolib/meta.yaml @@ -1,5 +1,5 @@ {% set name = "pybiolib" %} -{% set version = "1.2.181" %} +{% set version = "1.2.185" %} package: name: {{ name|lower }} @@ -7,7 +7,7 @@ package: source: url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pybiolib-{{ version }}.tar.gz - sha256: 6025ec0898d20ea83593144619b1c94b5f99b46955205a74537b97270924ce7f + sha256: 9525f0548dd11df88b33845ecf51d17ee9c2c5675a0723ebf5c25c586c58e598 build: number: 0 diff --git a/recipes/pytximport/meta.yaml b/recipes/pytximport/meta.yaml index d7245d020c367..c27f43344082a 100644 --- a/recipes/pytximport/meta.yaml +++ b/recipes/pytximport/meta.yaml @@ -1,5 +1,5 @@ {% set name = "pytximport" %} -{% set version = "0.8.0" %} +{% set version = "0.9.0" %} package: name: {{ name|lower }} @@ -7,7 +7,7 @@ package: source: url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/pytximport-{{ version }}.tar.gz - sha256: 18bdf4fbcd78092bba18f6941f5640a937b4f0230c30c2e8fca38ce207b3840b + sha256: f311705a71faa095d7e65de63235df55c805fbab4fbea10010fdae11014b3c95 build: noarch: python diff --git a/recipes/quatradis/meta.yaml b/recipes/quatradis/meta.yaml index a91fb4a8cd361..d06896d5b8edc 100644 --- a/recipes/quatradis/meta.yaml +++ b/recipes/quatradis/meta.yaml @@ -1,4 +1,4 @@ -{% set version="1.3.0" %} +{% set version = "1.3.1" %} package: name: quatradis @@ -6,33 +6,32 @@ package: source: url: https://github.com/quadram-institute-bioscience/QuaTradis/archive/refs/tags/{{ version }}.tar.gz - sha256: 8634c61c93073028fc35df46b3d1337e7716924051c336a12172c65e1adb2e74 + sha256: 0c05f40e14391b5044aa014cce345e43238ff01d06edfc72258f8608d3796590 build: number: 0 - script: python -m pip install -v --no-deps --ignore-installed . + script: {{ PYTHON }} -m pip install -vvv --no-deps --no-build-isolation --no-cache-dir . run_exports: - - {{ pin_subpackage('quatradis', max_pin="x.x") }} + - {{ pin_subpackage('quatradis', max_pin="x") }} requirements: build: - {{ compiler('c') }} host: - - python =3.10 - - cython >=0.20.1 + - python + - cython - pip run: - - python =3.10 - - cython + - python - setuptools # for pkg_resources + - cython - biopython - pysam >=0.18.0 - matplotlib-base - numpy - scipy - - dendropy - - seaborn - - graphviz + - dendropy ==4.6 + - seaborn-base - python-graphviz - pandas - htslib @@ -43,7 +42,7 @@ requirements: - bwa - samtools - minimap2 - - snakemake + - snakemake-minimal - snakeviz test: @@ -56,6 +55,7 @@ about: license_family: GPL3 license_file: LICENSE summary: 'A set of tools to analyse the output from TraDIS analyses' + dev_url: https://github.com/quadram-institute-bioscience/QuaTradis extra: skip-lints: @@ -66,5 +66,5 @@ extra: - sbastkowski - maplesond - thanhleviet - doi: - - 10.1093/bioinformatics/btw022 + identifiers: + - doi:10.1093/bioinformatics/btw022 diff --git a/recipes/r-diffcorr/meta.yaml b/recipes/r-diffcorr/meta.yaml index 75a7764de28b5..71a4ef28bc8e3 100644 --- a/recipes/r-diffcorr/meta.yaml +++ b/recipes/r-diffcorr/meta.yaml @@ -1,4 +1,4 @@ -{% set version = '0.4.3' %} +{% set version = '0.4.4' %} package: name: r-diffcorr @@ -8,7 +8,7 @@ source: url: - {{ cran_mirror }}/src/contrib/DiffCorr_{{ version }}.tar.gz - {{ cran_mirror }}/src/contrib/Archive/DiffCorr/DiffCorr_{{ version }}.tar.gz - sha256: b0d811cbd78eb69484fb184522cc358d9ad56235b85ee56bef22fc3c1d2df3f3 + sha256: c729fe399aceaf3afb975777ff3483e5d557d9b55b33fe5803bdb8949ff33b17 build: number: 0 diff --git a/recipes/seqfu/meta.yaml b/recipes/seqfu/meta.yaml index f101b83e34093..9dfcd4bb28b7f 100644 --- a/recipes/seqfu/meta.yaml +++ b/recipes/seqfu/meta.yaml @@ -1,6 +1,6 @@ {% set name = "seqfu" %} -{% set version = "1.22.0" %} -{% set sha256 = "e1b9032caab8e2effcc5a075b372c2fae636494b06e3bf2f30086c8d39fb5281" %} +{% set version = "1.22.2" %} +{% set sha256 = "0b66405ca98a80be614874fd1c1f651ecb410d953ac5070a0e93c77d2dbe1919" %} package: name: {{ name }} diff --git a/recipes/sizemeup/build.sh b/recipes/sizemeup/build.sh new file mode 100644 index 0000000000000..98412cd73fb29 --- /dev/null +++ b/recipes/sizemeup/build.sh @@ -0,0 +1,14 @@ +#!/bin/bash + +mkdir -p $PREFIX/bin ${PREFIX}/share/sizemeup + +# Install sizemup library +$PYTHON -m pip install --no-deps --ignore-installed -vv . + +# move main executable, and replace with wrapper +chmod 755 bin/sizemeup-bioconda +mv $PREFIX/bin/sizemeup $PREFIX/bin/sizemeup-main +cp -f bin/sizemeup-bioconda $PREFIX/bin/sizemeup + +# Copy genome size database (~100kb) +cp -f data/sizemeup-sizes.txt ${PREFIX}/share/sizemeup diff --git a/recipes/sizemeup/meta.yaml b/recipes/sizemeup/meta.yaml new file mode 100644 index 0000000000000..904ca91666424 --- /dev/null +++ b/recipes/sizemeup/meta.yaml @@ -0,0 +1,49 @@ +{% set name = "sizemeup" %} +{% set version = "1.1.0" %} + +package: + name: {{ name|lower }} + version: {{ version }} + +source: + url: https://github.com/rpetit3/sizemeup/archive/v{{ version }}.tar.gz + sha256: 3941e0b6affa2ba69c6ee01875d38ed8a94b864fbf51c4971a811d5483a61b8c + +build: + number: 0 + noarch: generic + run_exports: + - {{ pin_subpackage(name, max_pin='x.x') }} + +requirements: + host: + - python >=3.7 + - poetry + - pip + run: + - python >=3.7 + - requests + - rich-click >=1.6.0 + +test: + imports: + - sizemeup + commands: + - pip check + - sizemeup --version + - sizemeup --help + - sizemeup --query "Staphylococcus aureus" + - sizemeup -q 1280 + - sizemeup-build --help + requires: + - pip + +about: + home: https://github.com/rpetit3/sizemeup + summary: A simple tool to determine the genome size of an organism + license: MIT + license_file: LICENSE + +extra: + recipe-maintainers: + - rpetit3 diff --git a/recipes/slow5tools/meta.yaml b/recipes/slow5tools/meta.yaml index 1886640a6b95d..4941e1c8f1dc6 100644 --- a/recipes/slow5tools/meta.yaml +++ b/recipes/slow5tools/meta.yaml @@ -1,5 +1,5 @@ {% set name = "slow5tools" %} -{% set version = "1.2.0" %} +{% set version = "1.3.0" %} package: name: {{ name }} @@ -7,10 +7,10 @@ package: source: url: https://github.com/hasindu2008/slow5tools/releases/download/v{{ version }}/slow5tools-v{{ version }}-release.tar.gz - sha256: ce9d198f8368e90f440fce974e798b7f521b0fe4f859caf9a452bba1ca5af2d4 + sha256: f7221285e0090a5ca05a75f5e70c51d093138b2c8ad658b2756c3c6e51097d5d build: - number: 1 + number: 0 run_exports: - {{ pin_subpackage('slow5tools', max_pin="x") }} diff --git a/recipes/spreadgltools/meta.yaml b/recipes/spreadgltools/meta.yaml new file mode 100644 index 0000000000000..0cb09eeb3e772 --- /dev/null +++ b/recipes/spreadgltools/meta.yaml @@ -0,0 +1,60 @@ +{% set name ="SpreadGLtools" %} +{% set version ="1.1.0" %} +{% set sha256 ="de9319eb0cab7dcf042671c77fd473a7a03a8384ce7d476f10f89a8a100cbeec" %} + +package: + name: {{ name|lower }} + version: {{ version }} + +source: + url: https://github.com/GuyBaele/SpreadGL/archive/refs/tags/v{{ version }}.tar.gz + sha256: {{ sha256 }} + +build: + number: 0 + noarch: python + script_env: + - SETUPTOOLS_SCM_PRETEND_VERSION={{ version }} + script: | + cd scripts + {{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv + run_exports: + - {{ pin_subpackage(name|lower, max_pin="x") }} + +requirements: + host: + - python >=3.11 + - pip + run: + - python >=3.11 + - setuptools >=67.4.0 + - numpy >=1.23.2 + - pandas >=2.2.0 + - geojson >=3.0.1 + - pyproj >=3.4.1 + - dendropy >=4.5.2 + - geopandas >=0.12.2 + - rasterio >=1.3.6 + - rioxarray >=0.14.0 + - bottleneck >=1.3.7 + - gdal >=3.3.0 + +test: + commands: + - spread --help + - rates --help + - regions --help + - raster --help + - reprojection --help + - trimming --help + +about: + home: https://github.com/GuyBaele/SpreadGL + license: MIT + summary: 'Visualising pathogen dispersal in a high-performance browser application' + license_family: MIT + doc_url: https://github.com/GuyBaele/SpreadGL + +extra: + identifiers: + - doi:10.1101/2024.06.04.24308447 diff --git a/recipes/tracs/meta.yaml b/recipes/tracs/meta.yaml index 27dd65f6653b3..c0f21db61532b 100644 --- a/recipes/tracs/meta.yaml +++ b/recipes/tracs/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0" %} +{% set version = "1.0.1" %} {% set name = "tracs" %} package: @@ -7,7 +7,7 @@ package: source: url: https://github.com/gtonkinhill/{{ name|lower }}/archive/v{{ version }}.tar.gz - sha256: 8950cf46bf53160b03c639cf9c1aaca43e506ac60b081d3ba7ee0a3b61c800f9 + sha256: ea54a443c2a1a2bda7bb4dc9b79f79ffe5bfffc340ef8e6cc61f1df249ba4e5c build: number: 0 @@ -61,4 +61,4 @@ about: license_family: MIT license_file: LICENSE summary: 'Tracs - Fast pairwise transmission inference from single genome and/or metagenomic data' - doc_url: https://github.com/gtonkinhill/tracs/tree/main/docs \ No newline at end of file + doc_url: https://github.com/gtonkinhill/tracs/tree/main/docs diff --git a/recipes/viroconstrictor/meta.yaml b/recipes/viroconstrictor/meta.yaml index 40710eace6abf..d3bce9d30f325 100644 --- a/recipes/viroconstrictor/meta.yaml +++ b/recipes/viroconstrictor/meta.yaml @@ -17,7 +17,7 @@ build: - viroConstrictor = ViroConstrictor.__main__:main - Viroconstrictor = ViroConstrictor.__main__:main script: {{ PYTHON }} -m pip install . --no-deps -vvv - number: 0 + number: 1 run_exports: - {{ pin_subpackage('viroconstrictor', max_pin="x") }} @@ -40,7 +40,7 @@ requirements: - snakemake >=7.15.2, < 8 - aminoextract ==0.3.1 - conda - - mamba + - mamba >=1.5.0, <2.0.0 test: imports: @@ -63,5 +63,6 @@ about: extra: recipe-maintainers: - florianzwagemaker - - KHajji + - raaijmag + - wolthuisr - ids-bioinformatics diff --git a/recipes/yahs/Makefile.patch b/recipes/yahs/Makefile.patch index 347d4e9d7231d..263e6bffe6e59 100644 --- a/recipes/yahs/Makefile.patch +++ b/recipes/yahs/Makefile.patch @@ -1,10 +1,10 @@ diff --git a/Makefile b/Makefile -index 2174509..f7b8646 100644 +index 1cb880c..1c2283f 100644 --- a/Makefile +++ b/Makefile @@ -1,4 +1,4 @@ --CFLAGS= -g -O0 -Wall -fno-strict-aliasing -+CFLAGS += -g -O0 -Wall -fno-strict-aliasing +-CFLAGS= -O3 -Wall -fno-strict-aliasing ++CFLAGS += -O3 -Wall -fno-strict-aliasing CPPFLAGS= INCLUDES= OBJS= diff --git a/recipes/yahs/meta.yaml b/recipes/yahs/meta.yaml index 47ca09ece7c7e..b4cc5e55f410f 100644 --- a/recipes/yahs/meta.yaml +++ b/recipes/yahs/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.2.1" %} +{% set version = "1.2.2" %} package: name: yahs @@ -6,7 +6,7 @@ package: source: url: https://github.com/c-zhou/yahs/archive/refs/tags/v{{ version }}.tar.gz - sha256: 0e18c393424573323deecc4b71d1bf4620b74fc942cd0c8d056f57870bdd24c0 + sha256: 9ee37f72ee9f62015fe92029d0fa97eec90963ddf15a2f4b760b45ee2e0014aa patches: - Makefile.patch