diff --git a/recipes/zol/build.sh b/recipes/zol/build.sh index 048162828ed7d..630782d6a3810 100644 --- a/recipes/zol/build.sh +++ b/recipes/zol/build.sh @@ -4,20 +4,10 @@ $PYTHON -m pip install . --ignore-installed --no-deps -vv mkdir -p ${PREFIX}/bin -# (re)-compile RBH/InParanoid-esque programs written in C++ -${CXX} -std=c++11 -o zol/orthologs/runRBH zol/orthologs/runRBH.cpp -${CXX} -std=c++11 -o zol/orthologs/splitDiamondResults zol/orthologs/splitDiamondResults.cpp -${CXX} -std=c++11 -o zol/splitDiamondResultsForFai zol/splitDiamondResultsForFai.cpp - -cp zol/orthologs/runRBH ${PREFIX}/bin/ -cp zol/orthologs/splitDiamondResults ${PREFIX}/bin/ -cp zol/splitDiamondResultsForFai ${PREFIX}/bin/ -cp zol/clusterHeatmap.R ${PREFIX}/bin/ -cp zol/plotTinyAAI.R ${PREFIX}/bin/ -cp zol/plotSegments.R ${PREFIX}/bin/ -cp zol/njTree.R ${PREFIX}/bin/ -cp zol/phyloHeatmap.R ${PREFIX}/bin/ -cp zol/salt_gc_vs_ribo_aai.R ${PREFIX}/bin/ +export LDFLAGS= +${CXX} -std=c++11 -Wl,-headerpad_max_install_names -o ${PREFIX}/bin/runRBH src/zol/orthologs/runRBH.cpp +${CXX} -std=c++11 -Wl,-headerpad_max_install_names -o ${PREFIX}/bin/splitDiamondResults src/zol/orthologs/splitDiamondResults.cpp +${CXX} -std=c++11 -Wl,-headerpad_max_install_names -o ${PREFIX}/bin/splitDiamondResultsForFai src/zol/splitDiamondResultsForFai.cpp chmod +x ${PREFIX}/bin/runRBH chmod +x ${PREFIX}/bin/splitDiamondResults diff --git a/recipes/zol/meta.yaml b/recipes/zol/meta.yaml index ac3066121d731..6feff20c708e5 100644 --- a/recipes/zol/meta.yaml +++ b/recipes/zol/meta.yaml @@ -1,5 +1,5 @@ {% set name = "zol" %} -{% set version = "1.4.12" %} +{% set version = "1.5.0" %} package: name: {{ name|lower }} @@ -7,7 +7,7 @@ package: source: url: https://github.com/Kalan-Lab/zol/archive/refs/tags/v{{ version }}.tar.gz - sha256: cb02a98c7257a9d7ef089bc585637aa9ee5671c6b3a65dbaed6c0dd2331b651b + sha256: e1d0d090a08a26d2ecbb958d398dc47df94ffbaa034265086c7084d1e88cfb2d build: number: 0 @@ -56,6 +56,8 @@ requirements: - bioconductor-ggtree - ete3 - codoff + - gravis + - colour test: commands: