From 24720b5e5b9a9d31219eddc6abaaabaf7cffdfc8 Mon Sep 17 00:00:00 2001
From: Artem Tarasov <artem.tarasov@embl.de>
Date: Sat, 10 Sep 2016 09:34:57 +0200
Subject: [PATCH] fix test for PG

---
 .test_suite.sh | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/.test_suite.sh b/.test_suite.sh
index b9525086..87bcf8bb 100755
--- a/.test_suite.sh
+++ b/.test_suite.sh
@@ -84,7 +84,12 @@ testIssue204() {
 
 testIssue206() {
     ./build/sambamba markdup ex1_header.sorted.bam ex1_header.dedup.bam 2>/dev/null
-    ./build/sambamba view -H ex1_header.dedup.bam | grep '@PG' | grep -q 'sambamba markdup'
+    ./build/sambamba view -H ex1_header.dedup.bam | grep '@PG' | grep -q 'sambamba'
+    assertEquals 0 $?
+
+    ./build/sambamba view ex1_header.sorted.bam -f bam -o ex1_header.filtered.bam\
+                     -F "supplementary or secondary_alignment"
+    ./build/sambamba view -H ex1_header.filtered.bam | grep '@PG' | grep -q 'secondary'
     assertEquals 0 $?
 }