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Eliminate all data exchange via disk-files in the later stages #17

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bjclavijo opened this issue Nov 26, 2016 · 1 comment
Open

Eliminate all data exchange via disk-files in the later stages #17

bjclavijo opened this issue Nov 26, 2016 · 1 comment

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@bjclavijo
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I clutters the disk, but also makes functions more difficult to debug, understand, etc.

@bjclavijo bjclavijo added this to the w2rap-contigger v1.0 milestone Nov 26, 2016
@bjclavijo bjclavijo self-assigned this Nov 26, 2016
@bjclavijo bjclavijo added the WIP label Aug 7, 2019
@ljyanesm
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ljyanesm commented Aug 8, 2019

There are no temporary files for data exchange left.

Exceptions:

  • step3 reuses the output from step2 to build the initial graph without holding all the data in memory.
  • step4 needs to reload the graph to transform into larger K.

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