pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
	<modelVersion>4.0.0</modelVersion>
	<groupId>org.biojava</groupId>
	<artifactId>sequenceui</artifactId>
	<name>protein-sequence-gui</name>
	<version>2016.06.30.01-SNAPSHOT</version>
	<description>A GUI for showing protein sequences</description>

	<url>http://www.rcsb.org</url>
	<scm>
		<connection>scm:git:git://github.com/rcsb/rcsb-sequenceviewer.git</connection>
		<developerConnection>scm:git:git@github.com:rcsb/rcsb-sequenceviewer.git</developerConnection>
		<url>https://github.com/rcsb/rcsb-sequenceviewer</url>

		<tag>HEAD</tag>
	</scm>

	<!-- where Maven deploy will deploy project jars/wars -->
	<distributionManagement>
		<downloadUrl>http://nexus.rcsb.org/nexus/content/repositories/releases/</downloadUrl>
		<repository>
			<id>releases</id>
			<name>RCSB PDB Maven Repository</name>
			<url>http://nexus.rcsb.org/nexus/content/repositories/releases</url>

		</repository>
		<snapshotRepository>
			<id>snapshots</id>
			<url>http://nexus.rcsb.org/nexus/content/repositories/snapshots</url>
			<uniqueVersion>false</uniqueVersion>
		</snapshotRepository>
	</distributionManagement>

    <properties>
        <jdk.version>1.7</jdk.version>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <project.build.targetEncoding>UTF-8</project.build.targetEncoding>
        <maxmem>512M</maxmem>
        <biojava.version>4.2.2</biojava.version>
    </properties>

	<dependencies>
		<dependency>
			<groupId>org.json</groupId>
			<artifactId>json</artifactId>
			<version>20090211</version>
			<type>jar</type>
			<scope>compile</scope>
		</dependency>
		<dependency>
			<groupId>commons-collections</groupId>
			<artifactId>commons-collections</artifactId>
			<version>3.2.2</version>
			<type>jar</type>
			<scope>compile</scope>
		</dependency>
		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-lang3</artifactId>
			<version>3.4</version>
		</dependency>
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava-core</artifactId>
			<version>${biojava.version}</version>
			<scope>compile</scope>
		</dependency>
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava-modfinder</artifactId>
			<version>${biojava.version}</version>
			<scope>compile</scope>
		</dependency>
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava-structure</artifactId>
			<version>${biojava.version}</version>
			<scope>compile</scope>
		</dependency>
		<dependency>
			<groupId>org.biojava</groupId>
			<artifactId>biojava-structure-gui</artifactId>
			<version>${biojava.version}</version>
			<scope>compile</scope>
		</dependency>

		<!-- Junit -->
		<dependency>
			<groupId>junit</groupId>
			<artifactId>junit</artifactId>
			<version>4.10</version>
			<scope>test</scope>
		</dependency>
	</dependencies>

	<build>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-compiler-plugin</artifactId>
				<version>2.0.2</version>
				<configuration>
					<source>1.6</source>
					<target>1.6</target>
				</configuration>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-source-plugin</artifactId>
				<version>2.1.2</version>
			</plugin>
			<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-release-plugin</artifactId>
					<version>2.1</version>
					<configuration>
						<remoteTagging>true</remoteTagging>
						<preparationGoals>clean install</preparationGoals>
						<autoVersionSubmodules>true</autoVersionSubmodules>
					</configuration>

				</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-clean-plugin</artifactId>
				<version>2.4.1</version>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-javadoc-plugin</artifactId>
				<version>2.8</version>
			</plugin>
		</plugins>
		
		<extensions>
			<extension>
				<groupId>org.apache.maven.wagon</groupId>
				<artifactId>wagon-ssh</artifactId>
				<version>2.2</version>
			</extension>
		</extensions>
	</build>
</project>