Skip to content

Latest commit

 

History

History
30 lines (25 loc) · 2.57 KB

Gene.md

File metadata and controls

30 lines (25 loc) · 2.57 KB

Gene

Properties

Name Type Description Notes
label String RDFS Label [optional]
id String ID or CURIE e.g. MGI:1201606 [optional]
categories List<String> [optional]
xrefs List<String> Database cross-references. These are usually CURIEs, but may also be URLs. E.g. ENSEMBL:ENSG00000099940 [optional]
taxon Taxon Taxon to which the object belongs [optional]
pathwayAssociations List<Association> Assocations to pathways in which this gene is involved, including LEGO models [optional]
genotypeAssociations List<Association> associations to genotypes in which this gene is altered [optional]
fullName String full name, e.g. Synaptosome Associated Protein 29 [optional]
sequenceFeatures List<SequenceFeature> Sequence feature representing particular instance on a genome [optional]
functionAssociations List<Association> GO assocations for wild type gene [optional]
interactionAssociations List<Association> associations to genes that interact (may be physical or genetic) [optional]
transcripts List<Transcript> All transcripts belonging to this gene [optional]
literatureAssociations List<Association> publications for this gene [optional]
summaries List<SummaryPropertyValue> Attributed textual summaries [optional]
chromosome Chromosome chromosome on which this gene is located. This may be redundant with information in sequence_feature objects but is included here for convenience [optional]
diseaseAssociations List<Association> diseases associated with alterations of gene [optional]
phenotypeAssociations List<Association> phenotypes associated with alterations of gene [optional]
homologyAssociations List<Association> orthology and paralogy assocations for this gene [optional]
description String full text description [optional]
systematicName String E.g. SPBC428.08c for clr4 in PomBase [optional]
families List<NamedObject> Families, superfamilies etc to which these gene belongs [optional]