diff --git a/course_contents/IntroNextflowFundamentals.pdf b/course_contents/IntroNextflowFundamentals.pdf index 9407c14..d18231c 100644 Binary files a/course_contents/IntroNextflowFundamentals.pdf and b/course_contents/IntroNextflowFundamentals.pdf differ diff --git a/course_contents/IntroNextflowFundamentals.pptx b/course_contents/IntroNextflowFundamentals.pptx index ab165bd..983f286 100644 Binary files a/course_contents/IntroNextflowFundamentals.pptx and b/course_contents/IntroNextflowFundamentals.pptx differ diff --git a/course_contents/Tutorial.md b/course_contents/Tutorial.md index 2a9c307..4420f8f 100644 --- a/course_contents/Tutorial.md +++ b/course_contents/Tutorial.md @@ -149,7 +149,7 @@ process sayHello { Changing the code to write the variable (containing our grreting) in the output file: ```bash -echo '$greeting' > output.txt +echo "$greeting" > output.txt ``` ### 3. Creating an input channel @@ -318,7 +318,7 @@ process sayHello { script: """ - echo '$greeting' > '${greeting}-output.txt' + echo "$greeting" > "${greeting}-output.txt" """ } ``` @@ -345,7 +345,7 @@ Finally last modification to our script. Usually workflows start from a sample f ```bash mkdir data cd data -echo "Hello,Bonjour,Hola,Hej," > greetings.csv +echo "Hello,Bonjour,Hola,Hej" > greetings.csv less greetings.csv cd .. ``` @@ -416,7 +416,7 @@ process sayHello { script: """ - echo '$greeting' > '$greeting-output.txt' + echo "$greeting" > "$greeting-output.txt" """ } @@ -437,7 +437,7 @@ process convertToUpper { // now we add the bash code to convert the greeting to uppercase script: """ - cat '$input_file' | tr '[a-z]' '[A-Z]' > UPPER-${input_file} + cat "$input_file" | tr '[a-z]' '[A-Z]' > UPPER-${input_file} """ }