Course contents
Course contents
next
-Resources
+Nextflow fundamentals tutorial
For DTU-Biosustain and DTU-Bioenginnering
+Print the current version, system and runtime:
+:caption: Verify java installation:
+
+nextflow info
+Run hello.nf as it is, passing a parameter from the command line and after changing the code in the second process (rev $y) using –resume +nextflow run hello.nf +nextflow run hello.nf –greeting ‘Hello Albert’ +nextflow run hello.nf –greeting ‘Hello Albert’ -resume
+Course contents
Now, Nextflow should be ready to run in your GitHub Codespace environment! Let’s check that you have a fully functional environment.
-:caption: Verify java installation:
-
-java -version
+
+Verify java installation:#
+java -version
-:caption: Verify Nextflow installation:
-
-nextflow -v
+
+
+Verify Nextflow installation:#
+nextflow -v
-:caption: Nextflow information:
-
-nextflow info
+
+
+Nextflow information:#
+nextflow info
-:caption: Verify Docker installation:
-
-docker --version
+
+
+Verify Docker installation:#
+docker --version
+
diff --git a/course_information/Location.html b/course_information/Location.html
index 87b8f9b..db804d1 100644
--- a/course_information/Location.html
+++ b/course_information/Location.html
@@ -172,6 +172,7 @@
Course contents
- Resources
diff --git a/course_information/Timing.html b/course_information/Timing.html
index 81ac13d..35a69c2 100644
--- a/course_information/Timing.html
+++ b/course_information/Timing.html
@@ -172,6 +172,7 @@
Course contents
- Resources
diff --git a/folder_topic/article_topic.html b/folder_topic/article_topic.html
index 05cb73d..3617e78 100644
--- a/folder_topic/article_topic.html
+++ b/folder_topic/article_topic.html
@@ -172,6 +172,7 @@
Course contents
- Resources
diff --git a/genindex.html b/genindex.html
index 48863ed..95fad58 100644
--- a/genindex.html
+++ b/genindex.html
@@ -171,6 +171,7 @@
Course contents
- Resources
diff --git a/index.html b/index.html
index e1313b4..6b27b22 100644
--- a/index.html
+++ b/index.html
@@ -173,6 +173,7 @@
Course contents
- Resources
diff --git a/objects.inv b/objects.inv
index 9675242..9f28103 100644
Binary files a/objects.inv and b/objects.inv differ
diff --git a/resources.html b/resources.html
index 9630575..f6127e5 100644
--- a/resources.html
+++ b/resources.html
@@ -49,7 +49,7 @@
-
+
@@ -171,6 +171,7 @@
Course contents
- Resources
@@ -379,12 +380,12 @@ Citations
previous
- Contents
+ Nextflow fundamentals tutorial
diff --git a/search.html b/search.html
index dd3987d..b83e747 100644
--- a/search.html
+++ b/search.html
@@ -173,6 +173,7 @@
Course contents
- Resources
diff --git a/searchindex.js b/searchindex.js
index 250a7da..07b1ddf 100644
--- a/searchindex.js
+++ b/searchindex.js
@@ -1 +1 @@
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