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PATHS.yml
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PATHS.yml
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DATA:
ROOT:
./cache
TRIAL:
ROOT:
./cache/01_trial_data
CLIMA_LAND:
ROOT:
./cache/01_trial_data/01_clima_land
WRAPPER_DATA:
./cache/01_trial_data/01_clima_land/era5_2019_117_296_1X.csv
FEATURES:
ROOT:
./cache/02_features
SUBAREASELECTION:
ROOT:
./cache/02_features/subareas
V01:
./cache/02_features/subareas/2022_09_subareas_5y_48hnoo.csv
# end SUBAREASELECTION
ERA5HOURLY:
ROOT:
./cache/02_features/era5hourly
V01:
ROOT:
./cache/02_features/era5hourly/v01_full
LAND:
./cache/02_features/era5hourly/v01
# was renamed from ROOT to LAND after I realized the need for ERA5 single levels EXTRA data
EXTRA:
./cache/02_features/era5hourly/v01_extra
LOG:
./cache/02_features/era5hourly/v01/2022_09_29_14_25_cdsapifetch.csv
LOG_EXTRA:
./cache/02_features/era5hourly/v01_extra/2022_10_19_11_04_cdsapifetch.csv
# end ERAHOURLY
BIOMASS:
ROOT:
./cache/02_features/gm_biomass
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/f3a9530cb23714c5d2a3863a7317ff2bfb32077a/BIOMASS_SHOOT_120X_1Y_V2.nc
V01:
./cache/02_features/gm_biomass/BIOMASS_SHOOT_10X_1Y_V2.nc
# end BIOMASS
CANOPY_HEIGHT:
ROOT:
./cache/02_features/gm_canopy_height
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/8e82b3b97603651740df68ff493cb497c6f7b486/CH_20X_1Y_V1.nc
V01:
./cache/02_features/gm_canopy_height/CH_10X_1Y_V1.nc
# end CANOPY_HEIGHT
LAI:
ROOT:
./cache/02_features/gm_lai
GRIDDING_MACHINE:
"2015":
/home/biotoml/lsm/src/.julia/v1.7_depot/artifacts/536d3d2ae3b68a20e158b3ba3972b1d2c68435b0/LAI_MODIS_10X_8D_2015_V1.nc
"2016":
/home/biotoml/lsm/src/.julia/v1.7_depot/artifacts/4ca2094e4efdd74fc7a2b66a3fef5c04b8004626/LAI_MODIS_10X_8D_2016_V1.nc
"2017":
/home/biotoml/lsm/src/.julia/v1.7_depot/artifacts/12b9b9f8b8b54158a17e7ff0e691c1ab29418f5a/LAI_MODIS_10X_8D_2017_V1.nc
"2018":
/home/biotoml/lsm/src/.julia/v1.7_depot/artifacts/56d784ba6edd908549d26ade5d3fb2daf9c9d65b/LAI_MODIS_10X_8D_2018_V1.nc
"2019":
/home/biotoml/lsm/src/.julia/v1.7_depot/artifacts/87a9e1e1d7736ddc5466f40d83f3216f52efc642/LAI_MODIS_10X_8D_2019_V1.nc
V01:
./cache/02_features/gm_lai/LAI_MODIS_10X_8D_2015_2019_V1.nc
# end LAI
SOIL_MSWC:
ROOT:
./cache/02_features/gm_soil_mswc
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/035ee92010937a0aee873c88e8e4f3705fcc0d06/SOIL_SWCS_12X_1Y_V1.nc
V01:
./cache/02_features/gm_soil_mswc/SOIL_SWCS_10X_1Y_V1.nc
# end SOIL_MSWC
SOIL_WCR:
ROOT:
./cache/02_features/gm_soil_wcr
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/d5134186bfabf415032c06c8a484597bb235afe0/SOIL_SWCR_12X_1Y_V1.nc
V01:
./cache/02_features/gm_soil_wcr/SOIL_SWCR_10X_1Y_V1.nc
# end SOIL_WCR
SOIL_VGA:
ROOT:
./cache/02_features/gm_soil_vga
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/337b223183e9129d879b34a88c9ec36592bfc13e/SOIL_VGA_12X_1Y_V1.nc
V01:
./cache/02_features/gm_soil_vga/SOIL_VGA_10X_1Y_V1.nc
# end SOIL_VGA
SOIL_VGN:
ROOT:
./cache/02_features/gm_soil_vgn
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/137a141ba5dba7db1e9922efd26487fb77d810f7/SOIL_VGN_12X_1Y_V1.nc
V01:
./cache/02_features/gm_soil_vgn/SOIL_VGN_10X_1Y_V1.nc
# end SOIL_VGN
SOIL_KSAT:
ROOT:
./cache/02_features/gm_soil_ksat
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/b5ced69cd1849f1b001302ff23f1f8dbf1dabf43/SOIL_KSAT_100X_1Y_V2.nc
V01:
./cache/02_features/gm_soil_ksat/SOIL_KSAT_10X_1Y_V2.nc
# end SOIL_KSAT
SOIL_COLOR:
ROOT:
./cache/02_features/gm_soil_color
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/29cd434229d72705e9fa434c3a25e9889aba69e5/SC_2X_1Y_V1.nc
V01:
./cache/02_features/gm_soil_color/SC_10X_1Y_V1.nc
# end SOIL_COLOR
ELEVATION:
ROOT:
./cache/02_features/gm_elevation
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/8982c2361022359a3a954d9f35b65d48f6b9f39b/ELEV_4X_1Y_V1.nc
V01:
./cache/02_features/gm_elevation/ELEV_10X_1Y_V1.nc
# end ELEVATION
CHLOROPHYLL:
ROOT:
./cache/02_features/gm_chlorophyll
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/ce410fa4f36c3abdaa18da6c3afcd78c9656d929/CHL_2X_7D_V1.nc
V01:
./cache/02_features/gm_chlorophyll/CHL_10X_7D_V1.nc
# end CHLOROPHYLL
SURFACE_AREA:
ROOT:
./cache/02_features/gm_surface_area
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/66bbb2fe72a284075f54b254f91b68ec7414f3fb/SA_2X_1Y_V1.nc
V01:
./cache/02_features/gm_surface_area/SA_10X_1Y_V1.nc
# end SURFACE_AREA
CLUMPING_INDEX:
ROOT:
./cache/02_features/gm_clumping_index
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/bf4a75248eac9eac8e2f89e7634f30f1ca44174c/CI_2X_1Y_V1.nc
V01:
./cache/02_features/gm_clumping_index/CI_10X_1Y_V1.nc
# end CLUMPING_INDEX
PLANT_FUNC_TYPE:
ROOT:
./cache/02_features/gm_plant_func_type
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/ecc92c654ef31d99fdea975629b899686c0bb71b/PFT_2X_1Y_V1.nc
V01:
./cache/02_features/gm_plant_func_type/PFT_10X_1Y_V1.nc
# end PLANT_FUNC_TYPE
VCMAX_RUBISCO:
ROOT:
./cache/02_features/gm_vcmax_rubisco
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/f77d012b83e957bbb2c7498f4068e9169025d425/VCMAX_2X_1Y_V2.nc
V01:
./cache/02_features/gm_vcmax_rubisco/VCMAX_10X_1Y_V2.nc
# end VCMAX_RUBISCO
TREE_DENSITY:
ROOT:
./cache/02_features/gm_tree_density
GRIDDING_MACHINE:
./src/.julia/v1.7_depot/artifacts/b8a1db6ec352de2526af2d1d2e16caaef48b488e/TD_2X_1Y_V1.nc
V01:
./cache/02_features/gm_tree_density/TD_10X_1Y_V1.nc
# end TREE_DENSITY
# end DATA
CODE:
ROOT:
./src
METHODOLOGIES:
ROOT:
./src/02_methodologies
JULIA:
CDS_FETCHER:
./src/02_methodologies/cdsfetcher.jl
REGRIDDER:
./src/02_methodologies/regridding.jl
SPATIALPLOT:
./src/02_methodologies/spatialplotting.jl
UTILS_NETCDF:
./src/02_methodologies/utils_netcdf.jl
PYTHON:
SUBAREA:
./src/02_methodologies/subarea.py
SUBAREASELECTOR:
./src/02_methodologies/subareaselector.py
UTILS_SUBAREASELECTION:
./src/02_methodologies/utils_subareaselection.py
CDSAPI_CLIENT:
./src/02_methodologies/cdsapiclient.py
CDSAPI_FETCHER:
./src/02_methodologies/cdsapifetcher.py
SUBAREACSV:
./src/02_methodologies/subareacsv.py
UTILS_CDSAPI:
./src/02_methodologies/utils_cdsapi.py
CSV_WRITER:
./src/02_methodologies/csvwriter.py
EERAFETCHER:
./src/02_methodologies/eeerafetcher.py
REGRIDDER:
./src/02_methodologies/regridder.py
SPLITREGRIDDER:
./src/02_methodologies/splitregridder.py
XARRAYSPLITTER:
./src/02_methodologies/xarraysplitter.py
# end METHODOLOGIES
MODELS:
ROOT:
./src/03_test_models
PYTHON:
DATALOADER:
./src/03_test_models/dataloader.py
# end MODELS
SCRIPTS:
ROOT:
./src/scripts
SLURM:
ROOT:
./src/scripts/slurm
P01_ERA5:
./src/scripts/slurm/job_2022_09_29_14_16_31.sh
P02_REGRIDDING:
./src/scripts/slurm/job_2022_10_04_13_27_47.sh
PYTHON:
ROOT:
./src/scripts/python
01_ERA5:
./src/scripts/python/01_get_era5.py
02_REGRIDDING:
./src/scripts/python/02_regrid_griddinmachine_datasets.py
# end SCRIPTS
# end CODE
NOTEBOOKS:
ROOT:
./notebooks
REFERENCES:
./notebooks/pinN1_stories/references.bib
SLURM:
ROOT:
./notebooks/pinN1_stories/00_slurm
01_SCRIPT_AND_SUBMIT:
./notebooks/pinN1_stories/00_slurm/01_make_scripts_and_submit.ipynb
# end SLURM
MODEL_EXPLORATION:
ROOT:
./notebooks/pinN1_stories/01_model_exploration
01_RANKING:
./notebooks/pinN1_stories/01_model_exploration/01_submodel_ranking.ipynb
02_RANKING_CRITERIA:
./notebooks/pinN1_stories/01_model_exploration/02_submodel_criteria.ipynb
03_PROBLSMS:
./notebooks/pinN1_stories/01_model_exploration/03_problems_of_lsms.ipynb
# end MODEL_EXPLORATION
METHODOLOGIES:
ROOT:
./notebooks/pinN1_stories/02_methodologies
01_DEEPLEARNING:
./notebooks/pinN1_stories/02_methodologies/01_deep_learning_lsm.ipynb
02_DATASOURCES:
./notebooks/pinN1_stories/02_methodologies/02_sources_for_data_on_gpp.ipynb
03_CLSOURCES:
./notebooks/pinN1_stories/02_methodologies/03_sources_for_clima_land.ipynb
04_REGRID_JULIA:
./notebooks/pinN1_stories/02_methodologies/04_regrid_clima_land_data.ipynb
05_DOWNLOAD_CDS:
./notebooks/pinN1_stories/02_methodologies/05_download_cds_data.ipynb
06_REGRID_PYTHON:
./notebooks/pinN1_stories/02_methodologies/06_regridding_in_python.ipynb
07_SELECT_SUBAREAS:
./notebooks/pinN1_stories/02_methodologies/07_select_vegcovered_subareas.ipynb
08_ERA5_EE:
./notebooks/pinN1_stories/02_methodologies/08_download_era5_with_ee.ipynb
09_ERA5_CDSAPI:
./notebooks/pinN1_stories/02_methodologies/09_download_era5_with_cdsapi.ipynb
10_REGRID_FINALLY:
./notebooks/pinN1_stories/02_methodologies/10_regrid_data_finally.ipynb
# end METHODOLOGIES
TRIALS:
ROOT:
./notebooks/pinN1_stories/03_test_models
01_CLIMA_LAND_VANILLA:
./notebooks/pinN1_stories/03_test_models/01_clima_land_vanilla.ipynb
02_CLIMA_LAND_MODEL:
./notebooks/pinN1_stories/03_test_models/02_clima_land_grownup.ipynb
03_DATALOADER:
./notebooks/pinN1_stories/03_test_models/03_dataloader.ipynb
# end TRIALS
# end NOTEBOOKS
EXTERNAL:
ROOT:
./ext_src
01_CLIMA_LAND_V01:
ROOT:
./ext_src/01_julia_land_v01/Land
WRAPPER:
./ext_src/01_julia_land_v01/Land/clima-land.jl
SLURMSUBMITTER:
ROOT:
./island_in_the_sun/projects/beta-Cyclocitral/uppmax_scripts
UPPMAXSCRIPT:
./island_in_the_sun/projects/beta-Cyclocitral/uppmax_scripts/uppmax_script_class.py
BASICS:
./SCRIPT_BASICS.json
LOGDIR:
./cache/00_slurmlog
# end EXTERNAL
TUTORIAL:
ROOT:
./ext_src/02_tutorials
01_CLIMACORE:
ROOT:
./ext_src/02_tutorials/01_climacore/ClimaWorkshops
# end TUTORIAL
DOCUMENTATION:
ROOT:
./docs
PRESENTATIONS:
ROOT:
./docs/presentations
01_LITREVIEW:
./docs/presentations/01_literature_review
REPORTING:
ROOT:
./docs/reporting
MEETINGS:
./docs/reporting/01_meetings_documentation.md
# end DOCUMENTATION
SOFTWARE:
JULIA:
PROJECTS:
01_DEFAULT_1_7:
./src/.julia/v1.7
02_DEFAULT_1_6:
./src/.julia/v1.6
# end JULIA
# end SOFTWARE