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CHANGELOG.md

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Changelog

version 2.1.0

  • Update cutadapt version to 4.4
  • Update FastQC version to 0.12.1

version 2.0.0

  • By default, no adapters are set anymore. Adapters should be manually set by the user.

version 1.6.0

  • Update parameter_meta outputs.

version 1.5.0

  • Cutadapt has been updated to version 2.10.
  • The FastQC task can now set memory and threads independently. Memory for FastQC has been increased to support more types of NGS sequences without out-of-memory errors.
  • Tasks were updated to contain the time_minutes runtime attribute and associated timeMinutes input, describing the maximum time the task will take to run.

version 1.4.0

  • Update versions of Fastqc and Cutadapt.

version 1.3.0

  • Add proper copyright headers to WDL files. So the free software license is clear to end users who wish to adapt and modify.
  • Added wdl-aid to linting.
  • Added miniwdl to linting.

version 1.2.0

  • Added parameter_meta to QC workflow.
  • Added an overview of all inputs to the docs.
  • Fixed various issues causing miniwdl to be unable to parse the workflow.

version 1.1.0

  • Update tasks so they pass the correct memory requirements to the execution engine. Memory requirements are set on a per-task (not per-core) basis.

version 1.0.0

  • Remove default adapter setting for cutadapt. Set defaults in QC inputs.
  • Make sure documentation is up to date.
  • Update cutadapt to version 2.4. This container includes xopen 0.7.3 which opens the zipped fastq files through a pigz pipe. Also cutadapt 2.4 allows setting the compression level for the gzipped output fastq files to 1 instead of 6. This makes running cutadapt significantly faster.