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Changelog

v0.13.0 (unreleased)

  • Added support for Birdhouse Helper Bot (for bumping versions).
  • CI Actions and Python dependencies are now pinned to hashes.
  • Permissions have been set for all workflows.
  • Pinned cf-xarray` below v0.9.3.
  • Reformatted and renamed CHANGES.rst to CHANGELOG.rst.
  • Dropped support for Python 3.8. The supported versions are now Python 3.9, 3.10, and 3.11.
  • black has been updated to v2024.8.0, and coding conventions have been updated to Python3.9+.
  • Several dependencies now are pinned to baseline versions, including anyascii, dask, ipython, matplotlib, nbsphinx numpy, and sphinxcontrib-bibtex.

v0.12.1 (2024-06-25)

  • Replaced unidecode with anyascii due to a licensing issue.
  • Synchronized some dependencies across build systems.
  • Added a workaround in wps_geoseries_to_netcdf to handle a pandas v2.0 behaviour change.

v0.12.0 (2024-03-25)

  • Renamed the installed package from finch to birdhouse-finch.
  • First release of the birdhouse-finch package on PyPI.
  • Versioning now adheres to SemVer v2.0.0.
  • Added a Makefile recipe to the repository to evaluate notebooks while ignoring the output cells.
  • Cleaned up documentation to facilitate easier navigation.
  • Slightly reorganized the documentation for easier navigation.
  • Fast-forwarded the cookiecutter.
  • Fixed the Manifest.in to add all necessary files to wheel.
  • Removed references to files that have never existed (apidoc).
  • Cleaned up the setup code.
  • Added more files to be ignored in the .gitignore and in the Manifest.in.

v0.11.4 (2023-12-20)

  • Fixed a bug that occurred when fixing a broken cftime-index with newer cftime versions.
  • Placed pins on xarray and pandas to prevent future errors from changes to frequency codes.

v0.11.3 (2023-08-23)

  • Updated ReadTheDocs to use the new mambaforge version (2022.9).
  • Addressed calls in GitHub Action usage that were emitting warnings.
  • Updated MANIFEST.in to include and exclude the relevant files for the source distribution.
  • Modified the setup.py to only include the files necessary in the wheel.
  • Updated AUTHORS.rst to list more contributors.
  • Removed namespace file (__init__.py) from tests to ensure that they aren't treated like an importable package.
  • Updated pre-commit hooks.
  • Sorted software requirements for legibility.
  • Removed Travis-CI shell script.

v0.11.2 (2023-07-27)

  • Added a Docker-based testing suite to the GitHub Workflows.
  • Added a wider range of Python versions to test against in the GitHub Workflows.
  • Migrated conda-build action from mamba-org/provision-with-micromamba to mamba-org/setup-micromamba.
  • Cleaned up the Dockerfile. Docker now pip-installs finch directly from the GitHub repository.
  • Finch now explicitly supports Python3.11.
  • Pinned Python below 3.12 on conda and removed pin on pint for ReadTheDocs builds.
  • Added a GitHub Workflow to bump the version number and to create tags from the version bumping process on dispatch.
  • Added a pre-commit hook for validating the ReadTheDocs configuration and GitHub Workflows.

v0.11.1 (2023-06-19)

  • Update to xclim 0.43.0.
  • Added xclim yml module support:
    • Added humidex days above calculation via yml module.
    • Reimplmented streamflow indicators via yml module (adjust for xclim 0.41 breaking changes).
  • Fixed bug for CanDCS-U6 ensemble "26models" list.
  • Passing an empty string to ensemble_percentiles in ensemble processes will return the merged un-reduced ensemble. The different members are listed along the realization coordinates through raw names allowing for basic distinction between the input members.

v0.11.0 (2023-06-13)

  • Fixed iter_local when depth > 0 to avoid all files to be considered twice
  • Revised documentation configuration on ReadTheDocs to leverage Anaconda (Mambaforge)
  • Minor adjustments to dependency configurations
  • Removed configuration elements handling from finch start. One can still pass custom config files, but all configuration defaults are handled by finch/default.cfg and the WSGI function. jinja2 is not a dependency anymore.

v0.10.0 (2022-11-04)

  • Generalize ensemble datasets configuration.
    • Datasets usable by ensemble processes are now specified through a YAML file which is pointed to in the configuration.
    • As a consequence processes are generated according to the available variables. Similarly for the allowed values of some inputs on these processes.
    • The output name now includes the dataset name (if a custom name was not specified).
    • finch.processes.xclim was removed, there is no static module of processes.
    • Input "rcp" has been renamed to "scenario".
    • Input "dataset_name" has been fixed and renamed to "dataset".
  • Update to xclim 0.38.0.
  • Improved subset_grid_point_dataset & subset_bbox_dataset performance when using local files.

v0.9.2 (2022-07-19)

  • Fix Finch unable to startup in the Docker image.

v0.9.1 (2022-07-07)

  • Avoid using a broken version of libarchive in the Docker image.

v0.9.0 (2022-07-06)

  • Fix use of output_name, add output_format to xclim indicators.
  • Change all outputs to use output as the main output field name (instead of output_netcdf).
  • Updated to xclim 0.37.0:
    • Percentile inputs of xclim indicators have been renamed with generic names, excluding an explicit mention to the target percentile.
    • In ensemble processes, these percentiles can now be chosen through perc_[var] inputs. The default values are inherited from earlier versions of xclim.
  • Average shape process downgraded to be single-threaded, as ESMF seems to have issues with multithreading.
  • Removed deprecated processes subset_ensemble_bbox_BCCAQv2, subset_ensemble_BCCAQv2 and BCCAQv2_heat_wave_frequency_gridpoint.
  • Added csv_precision to all processes allowing CSV output. When given, it controls the number of decimal places in the output.

v0.8.3 (2022-04-21)

v0.8.2 (2022-02-07)

  • Add geoseries_to_netcdf process, converting a geojson (like a OGC-API request) to a CF-compliant netCDF.
  • Add output_name argument to most processes (excepted subsetting and averaging processes), to control the name (or prefix) of the output file.
  • New dependency python-slugify to ensure filenames are safe and valid.
  • Pinning dask to <=2022.1.0 to avoid a performance issue with 2022.1.1.

v0.8.0 (2022-01-13)

  • Add hourly_to_daily process, converting hourly data to daily data using a reduction operation (sum, mean, max, min).
  • Upgrade to clisops 0.8.0 to accelerate spatial averages over regions.
  • Upgrade to xesmf 0.6.2 to fix spatial averaging bug not weighing correctly cells with varing areas.
  • Update to PyWPS 4.5.1 to allow the creation of recursive directories for outputs.

Notes

  • Upgrading to birdy 0.8.1 will remove annoying warnings when accessing netCDF files from THREDDS.

v0.7.7 (2021-11-16)

  • Fix Sentry SDK initialization error

v0.7.6 (2021-11-16)

  • Update to xclim 0.31
  • Added SENTRY_ENV configuration
  • Possibility to pass multiple "rcp" inputs for ensemble processes.
  • Writing to netcdf is done only after calling load() to avoid locks occurring within dask calls to to_netcdf in multi-processing mode.
  • Add an average parameter to ensemble processes. When true, a spatial average is returned.

v0.7.5 (2021-09-07)

  • Update to xclim 0.27.0
  • Added empirical_quantile_mapping process calling xclim.sdba.EmpiricalQuantileMapping.
  • Update to PyWPS 4.4.5

v0.7.4 (2021-05-04)

  • Update to xclim 0.26.0.
  • Default metadata attributes are given through configuration, instead of being hardcoded.
  • Inclusion of a list of input dataset urls in ensemble processes.
  • Correct ensemble statistics on day-of-year indicators.

v0.7.3 (2021-04-13)

  • Workaround for clisops shutting down logging
  • More flexible chunking
  • New subsetting & averaging notebook
  • Require xESMF>=0.5.3

v0.7.2 (2021-04-01)

  • Add data_validation and cf_compliance arguments for ensemble xclim processes.

v0.7.1 (2021-03-25)

  • Add data_validation and cf_compliance arguments for xclim processes.
  • Skip data_validation checks for the BCCAQv2HeatWave process.

v0.7.0 (2021-03-15)

  • Add new process averaging gridded fields over a polygon using xESMF
  • Update to xclim 0.24, allowing for considerable simplification of the indicator process building mechanism
  • Update to PyWPS 4.4

v0.6.1 (2021-01-26)

  • Add partial support for xclim 0.23 with new indicators
  • Add support for land indicators
  • Add support for multivariate indicators
  • Upgrade PyWPS to 4.2.10
  • Fix bug in variable name inference
  • Add support for non-standard variable name (univariate case only)

v0.6.0 (2021-01-12)

  • fix to chunk regions of subsetted files
  • use cruft to propagate changes from the birdhouse cookiecutter
  • catch documentation build error earlier since doc build is part of regular CI build
  • catch tutorial notebooks out of sync with code earlier since also part of regular CI build
  • use mock imports to facilitate building docs
  • add partial support for xclim v0.21
  • add support for shapefiles in subset_shape

v0.5.2 (2020-03-25)

  • fix to remove realization coordinate from ensembles
  • added chunk datasets for local files also
  • update xclim to == 0.15.2

v0.5.1 (2020-03-18)

  • fix local bccaqv2 files filtering

v0.5.0 (2020-03-18)

  • update xclim to 0.15.0
  • add french translation of processes abstract and descriptions

v0.4.1 (2020-03-12)

  • fix #103 (drs_filename) add defaults when project_id is unknown
  • drs_filenames: use dash instead of underscores in variable names
  • fix #80 frequency attrs of computed datasets

v0.4.0 (2020-03-10)

  • Add ensembles processes
  • Allow ensemble process to specify which models are included
  • Accept multiple files for processing
  • Update from latest cookie-cutter template
  • Add grid point indicator processes
  • Add ensemble bbox processes
  • Add support for percentiles inputs
  • Update xclim to 0.14
  • Pin PyWPS to 4.2.4
  • Add DODS to supported formats for resources

v0.3.x (2020-01-17)

  • Extract common inputs and outputs to wpsio.py
  • Speed up CSV creation
  • Explicitly close thread pool
  • Tests for CSV conversion
  • Added subset_shape process
  • Pin PyWPS to ~4.2.3
  • Add start and end date to bccaqv2 subset
  • Identifier DAP link by header
  • Datetime fix when replacing hour to 12
  • deprecate lon0 and lat0 for SubsetGridPointBCCAQV2Process
  • change point subset processes to accept a comma separated list of floats for multiple grid cells

v0.2.7 (2019-12-09)

  • Fix for segmentation fault in libnetcdf (pin version to 4.6.2 until a fix is released)

v0.2.6 (2019-12-04)

  • Notebooks are tested by Travis-CI
  • Bug fix
  • Update xclim to >= 0.12.2
  • Update pywps to > 4.2.3

v0.2.5 (2019-10-03)

  • Add test for DAP input to subsetting
  • Update notebook to run on the Jenkins test suite

v0.2.3 (2019-05-27)

  • Allow creating CSV output
  • Keep global attributes when computing indices
  • Add BCCAQV2HeatWave process
  • Add basic usage notebook

v0.2.1 (2019-05-06)

  • Require Python>=3.6
  • Fix percentages in status update
  • Improve loggin

v0.2.0 (2019-05-02)

  • Added subset_gridpoint process
  • Support DAP links
  • Added bounding box subsetting
  • Threshold arguments passed as strings with units
  • Added test for heat_wave_frequency
  • Use sentry to monitor error messages
  • Include Dockerfile
  • Use processes instead of threads

v0.1.0 (2018-11-15)

  • First release.