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Utility for subsetting a vcf #22

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KuankuanHu opened this issue Oct 30, 2024 · 0 comments
Open

Utility for subsetting a vcf #22

KuankuanHu opened this issue Oct 30, 2024 · 0 comments

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@KuankuanHu
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It would be helpful to have a utility for subsetting sections or random sample from a vcf file.
Suggested codes for subsetting in R:

mycols<-colnames(myvcf)[c(1:9, seq(from=10, to=(10+n)-1), ncol(myvcf))]
fwrite(myvcf[,mycols, with = F], sep="\t", file = "test.vcf")
setnames(newvcf, "CHR", "###CHROM")
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@KuankuanHu