.gitignore

# Compiled Object files
*.slo
*.lo
*.o

# Compiled Dynamic libraries
*.so
*.dylib

# Compiled Static libraries
*.lai
*.la
*.a

*.py[cod]

# C extensions
*.so

# Packages
*.egg
*.egg-info
dist
build
eggs
parts
bin
var
sdist
develop-eggs
.installed.cfg
lib
lib64

# Installer logs
pip-log.txt

# Unit test / coverage reports
.coverage
.tox
nosetests.xml

# Translations
*.mo

# Mr Developer
.mr.developer.cfg
.project
.pydevproject

#cythoned files
*/xtc.c
*/dcd.c

# the autogenerated version.py file
MDTraj/version.py

docs/_build
docs/examples/generated/

docs/api/generated/
docs/examples/*.ipynb
docs/examples/*.py
docs/examples/.ipynb_checkpoints/
examples/.ipynb_checkpoints/

# cythoned files
MDTraj/formats/dcd/dcd.c
MDTraj/formats/binpos/binpos.c
MDTraj/formats/xtc/xtc.c
MDTraj/formats/xtc/trr.c
MDTraj/rmsd/_rmsd.c
MDTraj/rmsd/_lprmsd.c
MDTraj/rmsd/_lprmsd.cpp
MDTraj/geometry/src/_geometry.cpp
MDTraj/geometry/drid.c
MDTraj/formats/dtr/dtr.cpp
MDTraj/geometry/neighbors.cpp

# vim
*.swp

# PyCharm
.idea