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KeyError: "tag 'RG' not present" #252

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ChenDepp opened this issue Dec 26, 2024 · 1 comment
Open

KeyError: "tag 'RG' not present" #252

ChenDepp opened this issue Dec 26, 2024 · 1 comment

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@ChenDepp
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@brentp
hi, brentp When I run smoove genotype call to re-genotype sample genotypes based on all merged sites, it reports
image
But I use pysam parse sam file, I can get the RG tag

image
So how can I debug
hava a good day!

@brentp
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brentp commented Dec 26, 2024

hi, it must be that at least one of your alignments does not have the RG tag.

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