Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Allow to specify homozygote call threashold #56

Closed
fgvieira opened this issue Jun 25, 2020 · 0 comments
Closed

Allow to specify homozygote call threashold #56

fgvieira opened this issue Jun 25, 2020 · 0 comments

Comments

@fgvieira
Copy link

somalier calls REF homozygotes if ab < 0.01 and ALT if ab > 1-0.01. (link)
However, this value (0.01) cannot be specified in the command line. would it be possible to do it?

thanks,

@brentp brentp closed this as completed in 89fcb12 Jun 30, 2020
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant