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Trying to get BarraCUDA working on a recent system #3

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teepean opened this issue Oct 8, 2024 · 0 comments
Open

Trying to get BarraCUDA working on a recent system #3

teepean opened this issue Oct 8, 2024 · 0 comments

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@teepean
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teepean commented Oct 8, 2024

I have been trying several combinations of GCC and CUDA trying to get BarraCUDA working on a recent Ubuntu version but haven't had any luck. Do happen to have any binaries that I might test or possibly developed this further?

Thanks!

[aln_core] Running 0.7.0 beta $Revision: 1.112 $ CUDA mode.
[detect_cuda_device] Querying CUDA devices:
[detect_cuda_device] Device 0 NVIDIA GeForce RTX 4070 ,global memory size 12281 MB, compute capability 8.9.
[detect_cuda_device] Using CUDA device 0 NVIDIA GeForce RTX 4070, global memory size 12281 MB.
[aln_core] Loading BWTs, please wait..
[aln_core] Finished loading reference sequence assembly, 2992 MB in 7.70s (388.32 MB/s).
[aln_core] Memory available for performing alignment: 8076 MB.
[aln_core] Sweet! Running with an enlarged buffer.
[barracuda_read_seq] Better if sequences of the same length. 2
[aln_core] Now aligning sequence reads to reference assembly, please wait..
[aln_core] CUDA ERROR(s) reported during width/bid preparation! Last CUDA error message: an illegal memory access was encountered
[aln_core] Abort!
[main] Version: 0.7.0r107
[main] CMD: ./barracuda_80_11 aln ../hs37d5/hs37d5.fa FRA007.fastq.gz
[main] Real time: 7.979 sec; CPU: 4.926 sec

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