ImputationBeagle_development_v0.0.2

add set -e -o pipefail to all relevant imputation tasks (#1434)

Co-authored-by: Jose Soto <jsoto@broadinstitute.org>

SlideSeq_develop

3.4.6

2024-11-15 (Date of Last Commit)

• Added bam validation in the StarSoloFastq task; this does not affect the outputs of the pipeline

PairedTag_develop

1.8.3

2024-11-15 (Date of Last Commit)

• Added bam validation in the StarSoloFastq task; this does not affect the outputs of the pipeline

Optimus_develop

7.8.3

2024-11-15 (Date of Last Commit)

• Added bam validation in the StarSoloFastq task; this does not affect the outputs of the pipeline

Multiome_develop

5.9.2

2024-11-15 (Date of Last Commit)

• Added bam validation in the StarSoloFastq task; this does not affect the outputs of the pipeline

MultiSampleSmartSeq2SingleNucleus_develop

2.0.5

2024-11-15 (Date of Last Commit)

• Added bam validation in the StarSoloFastq task; this does not affect the outputs of the pipeline

atac_v2.5.2

2.5.2

2024-11-12 (Date of Last Commit)

• Added memory and disk updates to Multiome JoinBarcodes; this does not impact the ATAC workflow

SlideSeq_v3.4.5

3.4.5

2024-11-12 (Date of Last Commit)

• Added memory and disk updates to Multiome JoinBarcodes; this does not impact the SlideSeq workflow

PairedTag_v1.8.2

1.8.2

2024-11-12 (Date of Last Commit)

• Renamed the ATAC workflow library metric percent_target to atac_percent_target for compatibility with downstream tools
• Added more disk and memory to the ParseBarcodes task

Optimus_v7.8.2

7.8.2

2024-11-12 (Date of Last Commit)

• Added memory and disk updates to Multiome JoinBarcodes; this does not impact the Optimus workflow