NAMESPACE

# Generated by roxygen2: do not edit by hand

export(DESetup)
export(PowSim)
export(SimSetup)
export(estimateNBParam)
export(evaluateDist)
export(evaluateSim)
export(insilicoNBParam)
export(plotEvalDist)
export(plotEvalRes)
export(plotNBParam)
export(printEvalRes)
export(simulateDE)
importFrom(AnnotationDbi,as.list)
importFrom(BPSC,BPglm)
importFrom(BiocParallel,MulticoreParam)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,counts)
importFrom(DESeq2,dispersionFunction)
importFrom(DESeq2,estimateDispersions)
importFrom(DESeq2,estimateSizeFactors)
importFrom(DESeq2,results)
importFrom(DESeq2,sizeFactors)
importFrom(DSS,estDispersion)
importFrom(DSS,estNormFactors)
importFrom(DSS,newSeqCountSet)
importFrom(DSS,waldTest)
importFrom(EBSeq,EBTest)
importFrom(EBSeq,MedianNorm)
importFrom(IHW,adj_pvalues)
importFrom(IHW,ihw)
importFrom(MASS,glm.nb)
importFrom(MAST,FromMatrix)
importFrom(MAST,lrTest)
importFrom(MAST,zlm.SingleCellAssay)
importFrom(NBGOF,nb.gof.v)
importFrom(NOISeq,noiseqbio)
importFrom(NOISeq,readData)
importFrom(ROTS,ROTS)
importFrom(S4Vectors,mcols)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(baySeq,getLikelihoods)
importFrom(baySeq,getPriors.NB)
importFrom(baySeq,topCounts)
importFrom(cobs,cobs)
importFrom(cowplot,add_sub)
importFrom(cowplot,ggdraw)
importFrom(cowplot,ggsave)
importFrom(cowplot,plot_grid)
importFrom(data.table,data.table)
importFrom(doParallel,registerDoParallel)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,select)
importFrom(dplyr,slice)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(edgeR,DGEList)
importFrom(edgeR,calcNormFactors)
importFrom(edgeR,cpm.DGEList)
importFrom(edgeR,cpm.default)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,glmFit)
importFrom(edgeR,glmQLFTest)
importFrom(edgeR,glmQLFit)
importFrom(edgeR,topTags)
importFrom(edgeR,zscoreNBinom)
importFrom(fitdistrplus,fitdist)
importFrom(fitdistrplus,gofstat)
importFrom(gamlss.dist,ZINBI)
importFrom(gamlss.dist,ZIP)
importFrom(ggExtra,ggMarginal)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_pointrange)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,stat_density2d)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggthemes,theme_base)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,topTable)
importFrom(limma,voom)
importFrom(moments,moment)
importFrom(msir,loess.sd)
importFrom(nonnest2,vuongtest)
importFrom(parallel,makeCluster)
importFrom(parallel,mclapply)
importFrom(parallel,stopCluster)
importFrom(pscl,vuong)
importFrom(pscl,zeroinfl)
importFrom(qvalue,qvalue)
importFrom(reshape2,melt)
importFrom(scDD,scDD)
importFrom(scales,percent)
importFrom(scater,counts)
importFrom(scater,newSCESet)
importFrom(scater,sizeFactors)
importFrom(scater,sizeFactors.SCESet)
importFrom(scde,scde.error.models)
importFrom(scde,scde.expression.difference)
importFrom(scde,scde.expression.prior)
importFrom(scran,computeSumFactors)
importFrom(snow,makeCluster)
importFrom(snow,stopCluster)
importFrom(splines,ns)
importFrom(stats,AIC)
importFrom(stats,approx)
importFrom(stats,deviance)
importFrom(stats,dnbinom)
importFrom(stats,dpois)
importFrom(stats,ecdf)
importFrom(stats,fitted)
importFrom(stats,glm)
importFrom(stats,hatvalues)
importFrom(stats,logLik)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,p.adjust)
importFrom(stats,p.adjust.methods)
importFrom(stats,pchisq)
importFrom(stats,pf)
importFrom(stats,pnorm)
importFrom(stats,poisson)
importFrom(stats,predict)
importFrom(stats,qchisq)
importFrom(stats,qf)
importFrom(stats,quantile)
importFrom(stats,rbeta)
importFrom(stats,rbinom)
importFrom(stats,reorder)
importFrom(stats,residuals)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(tidyr,"%>%")
importFrom(tidyr,gather)
importFrom(tidyr,separate)
importFrom(tidyr,spread)
importMethodsFrom(baySeq,libsizes)