Quigley et al. - Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer

[SRodenburg]

https://pubmed.ncbi.nlm.nih.gov/30033370/

Study (n=101) with focus on SVs, includes RNA-Seq and clinical data. We will need to request data to the authors.
Mutation data is on hg38 so liftover required.

• create an issue on datahub before curating a study (one issue per study) and copy this checklist to the issue tracker
• List information of the dataset/paper in the issue, e.g. pmid, paper link, suppl file link
• Document the curation process, e.g. how and by whom the data was transformed
• Follow the data checklist
• Create a pull request to datahub once the data is curated
• Push to triage portal
• Import into msk and public portal database
• Update the default quick select study list see options for selecting tcga + non-tcga studies cbioportal#5831 (only for studies that are not overlapping with existing ones; only for human tumors, not cell lines)
• Update cBioPortal news

[rmadupuri]

Data Available:

• Table S1: Clinical
• Table S3: SV (only key genes)
• Table S4: MAF (only key genes)

Data Missing:

• Request whole genome MAF(hg38 ref), RNA-seq, SV, CNA

[stale]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs. Thank you for your contributions.

[sbabyanusha]

This issue is being closed as we couldn't get a response from the author.