Add API from past project

.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm-project.org/#use-with-ide
+.pdm.toml
+.pdm-python
+.pdm-build/
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# PyCharm
+#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
+#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
+#  and can be added to the global gitignore or merged into this file.  For a more nuclear
+#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
+#.idea/

pyproject.toml

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+[project]
+name = "stringdb"
+version = "0.1.0"
+description = "StringDB"
+authors = [
+    {name = "Hugo Cachitas",email = "hcachitas@gmail.com"},
+]
+dependencies = [
+]
+requires-python = ">=3.8"
+readme = "README.md"
+license = {text = "MIT"}
+
+[build-system]
+requires = ["setuptools>=61", "wheel"]
+build-backend = "setuptools.build_meta"
+
+
+[tool.pdm]
+distribution = true
+
+[tool.pdm.dev-dependencies]
+dev = [
+    "pytest>=8.1.1",
+]

src/stringdb/__init__.py

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+from .api import API
+
+__all__ = ["API"]

src/stringdb/api.py

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+import logging
+from typing import List, Optional
+
+logger = logging.getLogger(__name__)
+
+
+class API:
+    VERSION_ADDRESSES = {
+        "12.0": "https://string-db.org/",
+        "11.5": "https://version-11-5.string-db.org/",
+        "11.0b": "https://version-11-0b.string-db.org/",
+        "11.0": "https://version-11-0.string-db.org/",
+        "10.5": "https://version-10-5.string-db.org/",
+        "10.0": "https://version10.string-db.org/",
+    }
+
+    def __init__(self, version=None, client=None):
+        self.client = client
+
+        if version:
+            self.stable_address = self.VERSION_ADDRESSES[version]
+            self.version = version
+        else:
+            self.version = next(iter(self.VERSION_ADDRESSES))
+            self.stable_address = self.VERSION_ADDRESSES[self.version]
+
+    @property
+    def api_url(self):
+        return self.stable_address + "api"
+
+    def _get(self, endpoint: str, params: dict = {}):
+        url = "/".join([self.api_url, "json", endpoint])
+        logger.info("GET", url, params)
+        params.update(caller_identity=__name__)
+        if self.client:
+            response = self.client.get(url, params=params)
+            logger.info(response.status_code)
+            response.raise_for_status()
+            return response.json()
+        return (url, params)
+
+    def get_string_ids(
+        self,
+        identifiers: List[str],
+        species: int,
+        limit: int = 1,
+        echo_query: bool = True,
+    ):
+        params = {
+            "identifiers": "\r".join(identifiers),  # your protein list
+            "species": species,  # species NCBI identifier
+            "limit": limit,  # only one (best) identifier per input protein
+            "echo_query": echo_query,  # see your input identifiers in the output
+        }
+        return self._get("get_string_ids", params=params)
+
+    def get_interaction_partners(
+        self,
+        identifiers: List[str],
+        species: int,
+        # limit: Optional[int] = None,
+    ):
+        params = dict(
+            identifiers="\r".join(identifiers),
+            species=species,
+            # limit=limit,
+        )
+        return self._get("interaction_partners", params=params)