diff --git a/.github/workflows/labeler.yml b/.github/workflows/labeler.yml index 173926f3..1717a3d3 100644 --- a/.github/workflows/labeler.yml +++ b/.github/workflows/labeler.yml @@ -4,7 +4,6 @@ on: push: branches: - main - - master jobs: labeler: diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 17402643..3bd2f601 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -4,7 +4,6 @@ on: push: branches: - main - - master jobs: release: @@ -23,12 +22,12 @@ jobs: - name: Upgrade pip run: | - pip install --constraint=.github/workflows/constraints.txt pip + pip install --constraint=${PWD}/.github/workflows/constraints.txt pip pip --version - name: Install Poetry run: | - pip install --constraint=.github/workflows/constraints.txt poetry + pip install --constraint=${PWD}/.github/workflows/constraints.txt poetry poetry --version - name: Check if there is a parent commit @@ -60,15 +59,7 @@ jobs: uses: pypa/gh-action-pypi-publish@v1.8.10 with: user: __token__ - password: ${{ secrets.PYPI_TOKEN }} - - - name: Publish package on TestPyPI - if: "! steps.check-version.outputs.tag" - uses: pypa/gh-action-pypi-publish@v1.8.10 - with: - user: __token__ - password: ${{ secrets.TEST_PYPI_TOKEN }} - repository_url: https://test.pypi.org/legacy/ + password: ${{ secrets.FLIT_PASSWORD }} - name: Publish the release notes uses: release-drafter/release-drafter@v5.24.0 diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 6aacd160..b65c03c5 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -1,8 +1,9 @@ name: Tests on: - - push - - pull_request + push: + branches: [master] + pull_request: jobs: tests: @@ -45,7 +46,7 @@ jobs: - name: Upgrade pip run: | - pip install --constraint=.github/workflows/constraints.txt pip + pip install --constraint=${PWD}/.github/workflows/constraints.txt pip pip --version - name: Upgrade pip in virtual environments @@ -59,13 +60,13 @@ jobs: - name: Install Poetry run: | - pipx install --pip-args=--constraint=.github/workflows/constraints.txt poetry + pipx install --pip-args=--constraint=${PWD}/.github/workflows/constraints.txt poetry poetry --version - name: Install Nox run: | - pipx install --pip-args=--constraint=.github/workflows/constraints.txt nox - pipx inject --pip-args=--constraint=.github/workflows/constraints.txt nox nox-poetry + pipx install --pip-args=--constraint=${PWD}/.github/workflows/constraints.txt nox + pipx inject --pip-args=--constraint=${PWD}/.github/workflows/constraints.txt nox nox-poetry nox --version - name: Install ghostscript @@ -130,18 +131,18 @@ jobs: - name: Upgrade pip run: | - pip install --constraint=.github/workflows/constraints.txt pip + pip install --constraint=${PWD}/.github/workflows/constraints.txt pip pip --version - name: Install Poetry run: | - pipx install --pip-args=--constraint=.github/workflows/constraints.txt poetry + pipx install --pip-args=--constraint=${PWD}/.github/workflows/constraints.txt poetry poetry --version - name: Install Nox run: | - pipx install --pip-args=--constraint=.github/workflows/constraints.txt nox - pipx inject --pip-args=--constraint=.github/workflows/constraints.txt nox nox-poetry + pipx install --pip-args=--constraint=${PWD}/.github/workflows/constraints.txt nox + pipx inject --pip-args=--constraint=${PWD}/.github/workflows/constraints.txt nox nox-poetry nox --version - name: Download coverage data diff --git a/camelot/backends/poppler_backend.py b/camelot/backends/poppler_backend.py index 90d37a97..ac41d831 100644 --- a/camelot/backends/poppler_backend.py +++ b/camelot/backends/poppler_backend.py @@ -1,10 +1,13 @@ +import os +import sys import shutil import subprocess +path = os.path.dirname(sys.executable) + os.pathsep + os.environ['PATH'] class PopplerBackend: def convert(self, pdf_path, png_path): - pdftopng_executable = shutil.which("pdftopng") + pdftopng_executable = shutil.which("pdftopng", path=path) if pdftopng_executable is None: raise OSError( "pdftopng is not installed. You can install it using the 'pip install pdftopng' command." diff --git a/camelot/cli.py b/camelot/cli.py index e45664c1..cc349176 100644 --- a/camelot/cli.py +++ b/camelot/cli.py @@ -39,6 +39,12 @@ def set_config(self, key, value): default="1", help="Comma-separated page numbers." " Example: 1,3,4 or 1,4-end or all.", ) +@click.option( + "--parallel", + is_flag=True, + default=False, + help="Read pdf pages in parallel using all CPU cores.", +) @click.option("-pw", "--password", help="Password for decryption.") @click.option("-o", "--output", help="Output file path.") @click.option( diff --git a/camelot/handlers.py b/camelot/handlers.py index 66ee1697..74ddde7a 100644 --- a/camelot/handlers.py +++ b/camelot/handlers.py @@ -1,3 +1,4 @@ +import multiprocessing as mp import os import sys from pathlib import Path @@ -143,7 +144,12 @@ def _save_page(self, filepath: Union[StrByteType, Path], page, temp): instream.close() def parse( - self, flavor="lattice", suppress_stdout=False, layout_kwargs=None, **kwargs + self, + flavor="lattice", + suppress_stdout=False, + parallel=False, + layout_kwargs=None, + **kwargs ): """Extracts tables by calling parser.get_tables on all single page PDFs. @@ -153,8 +159,10 @@ def parse( flavor : str (default: 'lattice') The parsing method to use ('lattice' or 'stream'). Lattice is used by default. - suppress_stdout : str (default: False) + suppress_stdout : bool (default: False) Suppress logs and warnings. + parallel : bool (default: False) + Process pages in parallel using all available cpu cores. layout_kwargs : dict, optional (default: {}) A dict of `pdfminer.layout.LAParams `_ kwargs. @@ -171,14 +179,56 @@ def parse( layout_kwargs = {} tables = [] + parser = Lattice(**kwargs) if flavor == "lattice" else Stream(**kwargs) with TemporaryDirectory() as tempdir: - for p in self.pages: - self._save_page(self.filepath, p, tempdir) - pages = [os.path.join(tempdir, f"page-{p}.pdf") for p in self.pages] - parser = Lattice(**kwargs) if flavor == "lattice" else Stream(**kwargs) - for p in pages: - t = parser.extract_tables( - p, suppress_stdout=suppress_stdout, layout_kwargs=layout_kwargs - ) - tables.extend(t) + cpu_count = mp.cpu_count() + # Using multiprocessing only when cpu_count > 1 to prevent a stallness issue + # when cpu_count is 1 + if parallel and len(self.pages) > 1 and cpu_count > 1: + with mp.get_context("spawn").Pool(processes=cpu_count) as pool: + jobs = [] + for p in self.pages: + j = pool.apply_async( + self._parse_page,(p, tempdir, parser, suppress_stdout, layout_kwargs) + ) + jobs.append(j) + + for j in jobs: + t = j.get() + tables.extend(t) + else: + for p in self.pages: + t = self._parse_page(p, tempdir, parser, suppress_stdout, layout_kwargs) + tables.extend(t) + return TableList(sorted(tables)) + + def _parse_page( + self, page, tempdir, parser, suppress_stdout, layout_kwargs + ): + """Extracts tables by calling parser.get_tables on a single + page PDF. + + Parameters + ---------- + page : str + Page number to parse + parser : Lattice or Stream + The parser to use (Lattice or Stream). + suppress_stdout : bool + Suppress logs and warnings. + layout_kwargs : dict, optional (default: {}) + A dict of `pdfminer.layout.LAParams `_ kwargs. + + Returns + ------- + tables : camelot.core.TableList + List of tables found in PDF. + + """ + self._save_page(self.filepath, page, tempdir) + page_path = os.path.join(tempdir, f"page-{page}.pdf") + tables = parser.extract_tables( + page_path, suppress_stdout=suppress_stdout, layout_kwargs=layout_kwargs + ) + return tables diff --git a/camelot/io.py b/camelot/io.py index 78319bc9..12718828 100644 --- a/camelot/io.py +++ b/camelot/io.py @@ -15,6 +15,7 @@ def read_pdf( password=None, flavor="lattice", suppress_stdout=False, + parallel=False, layout_kwargs=None, **kwargs ): @@ -37,6 +38,8 @@ def read_pdf( Lattice is used by default. suppress_stdout : bool, optional (default: True) Print all logs and warnings. + parallel : bool, optional (default: False) + Process pages in parallel using all available cpu cores. layout_kwargs : dict, optional (default: {}) A dict of `pdfminer.layout.LAParams `_ kwargs. @@ -122,6 +125,7 @@ def read_pdf( tables = p.parse( flavor=flavor, suppress_stdout=suppress_stdout, + parallel=parallel, layout_kwargs=layout_kwargs, **kwargs ) diff --git a/camelot/utils.py b/camelot/utils.py index 90ed400e..29939f68 100644 --- a/camelot/utils.py +++ b/camelot/utils.py @@ -888,12 +888,14 @@ def get_page_layout( rsrcmgr = PDFResourceManager() device = PDFPageAggregator(rsrcmgr, laparams=laparams) interpreter = PDFPageInterpreter(rsrcmgr, device) - for page in PDFPage.create_pages(document): - interpreter.process_page(page) - layout = device.get_result() - width = layout.bbox[2] - height = layout.bbox[3] - dim = (width, height) + page = next(PDFPage.create_pages(document), None) + if page is None: + raise PDFTextExtractionNotAllowed + interpreter.process_page(page) + layout = device.get_result() + width = layout.bbox[2] + height = layout.bbox[3] + dim = (width, height) return layout, dim diff --git a/docs/user/quickstart.rst b/docs/user/quickstart.rst index aa9c9fa3..c3cff640 100644 --- a/docs/user/quickstart.rst +++ b/docs/user/quickstart.rst @@ -99,6 +99,26 @@ By default, Camelot only uses the first page of the PDF to extract tables. To sp The ``pages`` keyword argument accepts pages as comma-separated string of page numbers. You can also specify page ranges — for example, ``pages=1,4-10,20-30`` or ``pages=1,4-10,20-end``. +Extract tables in parallel +-------------------------- + +Camelot supports extracting tables in parrallel using all the available CPU cores. + +:: + + >>> tables = camelot.read_pdf('foo.pdf', page='all', parallel=True) + >>> tables + + +.. tip:: + Here's how you can do the same with the :ref:`command-line interface `. + :: + + $ camelot --pages all --parallel lattice foo.pdf + +.. note:: The reading of the PDF document is parallelized by processing pages by different CPU core. + Therefore, a document with a low page count could be slower to process in parallel. + Reading encrypted PDFs ---------------------- diff --git a/poetry.lock b/poetry.lock index c7954950..152a22a7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -13,106 +13,127 @@ files = [ [[package]] name = "attrs" -version = "23.1.0" +version = "23.2.0" description = "Classes Without Boilerplate" optional = false python-versions = 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"sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"}, + {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"}, ] [package.extras] -docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] +docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"] testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"] [metadata] diff --git a/pyproject.toml b/pyproject.toml index 156cd8dd..42d4b4d3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] -name = "camelot" -version = "0.20.1" +name = "pypdf_table_extraction" +version = "0.0.1" description = "PDF Table Extraction for Humans." authors = ["Vinayak Mehta "] license = "MIT" diff --git a/tests/files/diesel_engines.pdf b/tests/files/diesel_engines.pdf new file mode 100644 index 00000000..2f14f161 Binary files /dev/null and b/tests/files/diesel_engines.pdf differ diff --git a/tests/test_cli.py b/tests/test_cli.py index 27ac41c5..0903dfa3 100644 --- a/tests/test_cli.py +++ b/tests/test_cli.py @@ -62,6 +62,30 @@ def test_cli_stream(testdir): assert format_error in result.output +@skip_on_windows +def test_cli_parallel(testdir): + with TemporaryDirectory() as tempdir: + infile = os.path.join(testdir, "diesel_engines.pdf") + outfile = os.path.join(tempdir, "diesel_engines.csv") + runner = CliRunner() + result = runner.invoke( + cli, + [ + "--parallel", + "--pages", + "1,2,3", + "--format", + "csv", + "--output", + outfile, + "lattice", + infile, + ], + ) + assert result.exit_code == 0 + assert result.output == "Found 2 tables\n" + + def test_cli_password(testdir): with TemporaryDirectory() as tempdir: infile = os.path.join(testdir, "health_protected.pdf")