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setup.py
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setup.py
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import setuptools
with open("README.rst", "r") as fh:
long_description = fh.read()
setuptools.setup(
name="astir",
version="0.1.2",
author="Jinyu Hou, Sunyun Lee, Michael Geuenich, Kieran Campbell",
author_email="kierancampbell@lunenfeld.ca",
description=" ",
long_description=long_description,
# long_description_content_type="text/markdown",
url="https://github.com/camlab-bioml/astir",
packages=setuptools.find_packages(),
classifiers=[
"Programming Language :: Python :: 3",
"License :: OSI Approved :: GNU General Public License v2 (GPLv2)",
"Operating System :: OS Independent",
"Topic :: Scientific/Engineering :: Bio-Informatics",
],
license="GPLv2",
install_requires=[
"torch",
"pandas",
"numpy",
"nbformat",
"pyyaml",
"scikit-learn",
"argparse",
"matplotlib",
"loompy",
"tqdm",
"anndata",
"rootpath",
"nbconvert",
"nbformat",
"seaborn",
"jupyter_client",
"ipykernel",
"ipython",
"h5py",
"FlowCytometryTools",
"fastcluster",
"sphinx",
"sphinx_autodoc_typehints",
"sphinx_rtd_theme",
"autodocsumm",
"nbsphinx",
"nbsphinx_link",
"tables",
"typeguard",
"mypy",
],
project_urls={
"Documentation": "https://astir.readthedocs.io/en/latest/",
"Source Code": "https://github.com/camlab-bioml/astir",
},
include_package_data=True,
zip_safe=False,
# test_suite="nose.collector",
# test_require=["nose"],
scripts=["bin/astir"],
)