1.13.0 - Overlapping reads support

1.13.0

• Overlapping reads now handled #78
• Fixes for #64, #65, #61

Release candidate - Overlapping reads

1.13.0-rc1

Merge branch 'overlapping_reads' into feature/overlapping_reads

1.11.5 - backport edge-case

Backport of fix for #74 .

1.11.4 - backport edge-case

Backport of fix for #74.

1.12.0 - Intermediate output gzipped

• Now outputs snp and mut vcf files as gzipped.
• Requires zlib >= 1.2.3.5

1.11.2

Update htslib version to bring CGP stack in line

(1.11.1 updated an unused variable)

1.11.0 - Speed improvements

• Rearranged htslib pileup code

1.10.1 - fclose bugfix

• Correction to fclose in estep.c

1.10.0 - Improves file handling

Adds fflush and fclose testing to all file writing.

Bugfix release - Removes dependancy on ENA when testing

Removes dependancy on ENA for reference sequences when running tests against CRAM files.
Sequence now embeded more like a BAM.