From 3fb13a5dc3445052110d956f38a63d19a9e703b3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Nelly=20S=C3=A9lem?= Date: Sat, 13 Apr 2024 06:17:39 -0600 Subject: [PATCH] Update 03-horizontalGeneTransfer-TDA.md --- _episodes/03-horizontalGeneTransfer-TDA.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/_episodes/03-horizontalGeneTransfer-TDA.md b/_episodes/03-horizontalGeneTransfer-TDA.md index 4f608f9..bd4cdef 100644 --- a/_episodes/03-horizontalGeneTransfer-TDA.md +++ b/_episodes/03-horizontalGeneTransfer-TDA.md @@ -366,7 +366,7 @@ other processes could be involved. {: .challenge} > -Firs we will read the _S. agalactiae_ resistance genes that +First, we will read the _S. agalactiae_ resistance genes that we obtained in the episode [Annotating Genomic Data](https://carpentries-incubator.github.io/pangenomics/03-annotation-with-Prokka/index.html), from the lesson [Pangenome Analysis in Prokaryotes](https://carpentries-incubator.github.io/pangenomics/index.html). ~~~ link="https://raw.githubusercontent.com/carpentries-incubator/topological-data-analysis/gh-pages/files/agalactiae_card_full.tsv" @@ -391,7 +391,7 @@ agalactiae_NEM316 1 0 1 0 1 1 1 1 1 1 ~~~ {: .output} -Now, we will obtained the values from the dataframe. +Now, we will obtain the values from the data frame. ~~~ values=df_transposed_new.iloc[:,:].values ~~~ @@ -420,7 +420,7 @@ strains_names {: .output} > ## Exercise 2: Persistent homology of _S. agalactiae_ resistome -> Fill in the blanks with the following parameters to calculate the persisten homology of the _S. agalactiae_ resistome. +> Fill in the blanks with the following parameters to calculate the persistent homology of the _S. agalactiae_ resistome. > hamming_matrix_3, values, calculate_hamming_matrix, create_complex > > ~~~